Oryctolagus cuniculus (rabbit): 100341361
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Entry
100341361 CDS
T03373
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG5
KO
K11125
protein SMG5
Organism
ocu
Oryctolagus cuniculus (rabbit)
Pathway
ocu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100341361
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocu03019
]
100341361
03032 DNA replication proteins [BR:
ocu03032
]
100341361
Messenger RNA biogenesis [BR:
ocu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
100341361
mRNA cycle factors
Common to processing body (P body) and stress granule
100341361
DNA replication proteins [BR:
ocu03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
100341361
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
100341361
NCBI-ProteinID:
XP_051714513
Ensembl:
ENSOCUG00000012886
LinkDB
All DBs
Position
13:36879106..36909923
Genome browser
AA seq
1016 aa
AA seq
DB search
MSQGPPTGESSEPEAKVLHTKRLYRAVVEAVHRLDLILCNKTAYQEVFKPENISLRNKLR
ELCVKLMFLHPVDYGRKAEELLWRKVYYEVIQLIKTNKKHIHSRSTLECAYRTHLVAGIG
FYQHLLLYIQSHYQLELQCCIDWTHVTDPLIGCKKPVSASGKEMDWAQMACHRCLVYLGD
LSRYQNELAGVDTELLAERFYYQALSVAPQIGMPFNQLGTLAGSKYYNVEAMYCYLRCIQ
SEVSFEGAYGNLKRLYDKAAKMYHQLKKCETRKLSPSRKRGKDIKRLLVNFMYLQSLLQP
KSSSVDSELTSLCQSVLEDFNLCLFYLPSSPNLSLASEDEEEYESGYAFLPDLLIFQMVI
ICLMGVHSLKRAGSKQYSAAIAFTLALFSHLVNHVNIRLQAELEEGENPVPAFQSDGTDE
PESKEPLEKEEEPEPEPPSPAPQAEEGRKSRKFSRLSCLRRRRHPPKAGDDSDLSEGFES
DSSHDSARASEGSDSGSDKSLEGGGTAFDAETDSEMNSQESRSDLEDMEDEEGTRSPAPE
PPRARSEAPESLNGPLGPSEASIASNLQAMSTQMFQTKRCFRLAPTFSNLLLQPSTEAHA
LASRGPCVNGDVEKPAEPASEEGSESEGSESSGRSCRNERSVQEKLQVLMAEGLLPAVKV
FLDWLRTNPDLIIVCAQSSQSLWNRLSVLLNLLPAAGELQESGLGLCPEVQDLLEACELP
ELPSSLLLPEDMALRNLPPLRAAHTRFSFDTDRPLLSVLEESVVRICCIRSFGHFVARLQ
GSILQFNPEVGIFISIAQSEQESLLQQAQAQFRMAQEEARRNRLMRDMAQLRLQLEVSQL
EGSLQQPRAQSAMSPYLIPDTQALCHHLPLIRQLAASGRFIVLIPRTVIDGLDLLKKEHP
GARDGIRYLEAEFKKGNRYIRCQKEVGKSFERHKLKRQDADAWTLYKILDSCKQLTLTQG
AGEEDPSGMVTIVTGLPLDNPSALSGPMQAALQAAAHASVDIKNVLDFYKQWKEIG
NT seq
3051 nt
NT seq
+upstream
nt +downstream
nt
atgagccaaggcccccccacgggggagagcagcgagcccgaagcaaaggtcctccacact
aagcggctttaccgggctgtggtggaggctgtgcatcgacttgatctcatcctttgcaac
aaaaccgcttatcaagaagtgttcaagccggagaacattagcctgaggaacaagctgcgt
gagctctgcgtcaagcttatgttcctgcacccagtggactatgggaggaaggctgaggag
cttctgtggagaaaggtgtactatgaagttatccagcttatcaagactaacaaaaagcac
atccacagccggagcactttggaatgtgcctacaggactcacctggtcgctggcattggc
ttctaccagcatctcctcctctacatccagtcccactaccagctcgaactgcagtgctgc
atcgactggacccacgtcaccgaccccctcataggatgcaagaagccagtgtctgcctca
gggaaggagatggactgggcgcagatggcgtgccaccgatgtctggtgtacctgggagat
ctgtcgcgatatcagaatgaattggctggtgtagacactgagctgctagctgagaggttt
tactaccaagctctgtcagtggctccccagattggaatgcccttcaaccagctgggcacg
cttgcaggcagcaagtactataacgtagaagccatgtattgctacctgcgctgcatccag
tcggaagtgtcctttgaaggagcctatgggaacctcaagcggctgtatgacaaggcagcc
aaaatgtaccaccagctgaagaagtgtgagacccggaaactgtcccccagcaggaagcgc
ggtaaggacatcaagaggctgctggtgaacttcatgtacctgcagagcctcctgcagccc
aagagcagctccgtggactcagagctgacctcgctttgccagtcggtcctggaagacttc
aacctctgtctcttctacctgccctcctcgcccaacctcagcctggccagtgaggacgag
gaggagtacgagagtggatatgccttcctcccggaccttctcatctttcagatggtcatc
atctgccttatgggggtgcacagcttgaagcgagcaggatccaagcagtacagcgcagcc
attgccttcaccttggccctgttttcccacctcgtcaatcatgtcaacatacggctgcag
gcggagctggaggagggcgagaaccctgtcccggccttccagagtgatggcacagatgaa
ccagaatctaaggaacccctggaaaaagaagaggagccagaacctgagcctccttcccct
gccccacaagcggaggagggccgaaagagccggaagttctcccgcctctcctgcctccgc
cgccgccgccacccacccaaagccggtgatgacagtgacctgagtgagggcttcgaatcg
gattcaagccatgactcggcccgggccagcgagggctcagacagtggctctgacaagagt
cttgaaggtgggggcacagcctttgatgctgagacagactcagagatgaacagccaggag
tcccgatccgacctggaagacatggaggatgaggaggggacacggtccccggccccggag
ccccctcgggccagatcagaggctcccgagtccctcaacggcccactcggccccagcgag
gcaagcattgccagcaacctacaagccatgtccacccagatgttccagaccaagcgctgc
ttccgcctggcgcccaccttcagcaacctgctcctgcagcccagcaccgaagcgcatgcc
ttggccagccgagggccgtgtgtcaacggggatgtggagaagcctgcagagccagcctcc
gaagaaggctccgagtcagaggggagcgagtccagtgggcgttcctgtcggaacgagcgc
agcgtccaagagaagctgcaggtgctgatggccgaaggcctgcttcccgccgtgaaggtc
ttcctggactggctgcgcaccaaccccgacctcatcatcgtgtgtgcgcagagttcccag
agcctctggaaccgcctgtccgtgttgctgaatctactgccagccgctggcgaacttcag
gagtctgggctgggcctgtgtcctgaggtccaggatctgctcgaggcttgtgaactgcct
gagctcccctccagcctgctgctgccagaggacatggccctccgaaacctgcctccgctg
cgggctgcgcacacgcgcttcagcttcgacacggaccggcccctgctcagcgtcctagag
gagtcggtggtgcgcatctgctgcatccgcagctttgggcacttcgtcgcccgcctgcaa
ggcagcatcctgcagttcaaccccgaggtgggcatcttcatcagcatcgcccagtctgag
caggagagcctgctgcagcaggcccaggcccagttccgcatggcgcaggaggaggcgcga
cggaacaggctgatgagggacatggctcagctgcggctccagctcgaagtgtctcagctg
gagggcagcttgcagcagcccagggcccagtcggccatgtctccctacctcatccccgac
acccaggccctctgccaccacctcccgctcatccgccagctggccgccagcggccgtttc
atcgtcctgataccgaggacagtgatcgatggcctggatttgctgaagaaggagcacccc
ggggcccgggacgggatacgttacctggaggcagagtttaaaaaaggaaacaggtacatt
cgctgccagaaggaggtgggaaagagctttgagcgccataagctgaagaggcaggatgca
gatgcctggaccctctataagatcctggacagctgcaaacagctgactctgacccagggg
gcaggggaagaggacccgagtggcatggtgaccatcgtcacgggccttccactggacaac
cccagtgcgctgtcaggccccatgcaggcagccctgcaggccgctgcccacgccagcgtg
gacatcaagaacgttctagacttctacaagcagtggaaggagattggttga
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integrated database retrieval system
