Oryctolagus cuniculus (rabbit): 100341460
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Entry
100341460 CDS
T03373
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
ocu
Oryctolagus cuniculus (rabbit)
Pathway
ocu03030
DNA replication
ocu03420
Nucleotide excision repair
ocu03430
Mismatch repair
ocu03440
Homologous recombination
ocu03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
100341460
03420 Nucleotide excision repair
100341460
03430 Mismatch repair
100341460
03440 Homologous recombination
100341460
03460 Fanconi anemia pathway
100341460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocu03000
]
100341460
03032 DNA replication proteins [BR:
ocu03032
]
100341460
03400 DNA repair and recombination proteins [BR:
ocu03400
]
100341460
Transcription factors [BR:
ocu03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
100341460
DNA replication proteins [BR:
ocu03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
100341460
DNA repair and recombination proteins [BR:
ocu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
100341460
MMR (mismatch excision repair)
100341460
DSBR (double strand breaks repair)
HR (homologous recombination)
100341460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
IBR
Motif
Other DBs
NCBI-GeneID:
100341460
NCBI-ProteinID:
XP_008269149
Ensembl:
ENSOCUG00000001504
UniProt:
G1SFK3
LinkDB
All DBs
Position
19:complement(13855130..13915984)
Genome browser
AA seq
616 aa
AA seq
DB search
MVGHLSEGAIAAILQQGDTSIQPILQVINIRPITTGNSPPRYRLLMSDGLNTLSSFMLAT
QLNPLVEEERLSSNCICQVNRFIVNTLKDGRRVVILMEVEVLKSAEAVGMKIGNPVPYNE
GHGQQQALPPPVTAASAPASKPQQQNGSAGMGPPVSKSFGASKAFGKSGGSSLLNTAGGT
QSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVDESGEIRATAFNE
QVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFVNETSVMPCEDGHHLPTVQF
AFTGIDALENKPKDSLVDIIGICKSYEDATKITVKSNNREVAKRNIYLMDTSGKVVTATL
WGEDADRFDGSRQPVLAIKGARVSDFGGRSLSVLSSSTVIVNPDIPEAYKLRGWFDSEGQ
ALDGVSISDLKSGGMGGSNTNWKTLYEVKSENLGQGDKADYFSSVATVVYLRKENCMYQA
CPTQDCNKKVIDQQNGLYRCEKCDSEFPNFKYRMILSVNIADFQENQWVTCFQESAEAIL
GQNTAYLGELKEKNEQAFEEVFQNANFRSFTFRIRVKLETYNDESRIKATVMDVKPVDYR
EHARRLIMNIRRNAAL
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atggtcggccacctgagtgagggggccattgcggccatattgcagcagggagatacatct
attcaacccatcctgcaggtcattaacatccgtcccattacgacagggaatagcccaccc
cgttatcgactgctcatgagtgatggactgaacactctgtcctctttcatgttggcaaca
cagttgaaccctcttgttgaggaagaacgattgtccagcaactgtatttgccaggtgaac
cgatttattgttaacacgctgaaagatggaaggagagtagtcattttgatggaagtagaa
gttctgaagtcagctgaagcggtcggaatgaagatcggcaatccggtgccctacaatgaa
ggacatgggcagcagcaggcacttcctcctccagtcacagcagccagtgccccggccagc
aagccccagcaacagaacgggagcgcgggcatgggtccacccgtatctaagtcttttggt
gcctcaaaggcatttggaaaatctggaggttccagtctgttgaacactgctgggggaaca
cagtccaaagtggtacccattgccagcctcaccccttaccagtccaagtggactatttgt
gctcgtgttaccaacaaaagccagatccgcacctggagcaattccagaggggaagggaag
cttttctccatagagctggttgatgaaagcggtgaaatcagagctactgctttcaatgag
caggtggacaagttctttccccttattgaagtgaacaaggtgtattatttctcaaaaggc
accctgaagatagccaacaaacaattcacagctgttaaaaacgactatgagatgaccttc
gttaacgagacgagtgtgatgccctgtgaagacgggcaccatctgcccacggtccagttt
gctttcaccgggatcgacgccctagagaataagcccaaggactcacttgtagacataatt
gggatctgcaagagctatgaagatgccacaaaaatcacagtgaaatctaacaacagagaa
gtcgctaagagaaatatctatctgatggacacgtcggggaaggtggtgactgccactctg
tggggagaagatgctgatagatttgatggctctagacagcctgtgctagctatcaaagga
gccagagtttctgattttggtgggcggagcctgtctgtcctgtcttcaagcactgtcatt
gtgaatcctgacatcccagaggcctacaagcttcgtggctggttcgactcggaagggcaa
gccttggatggtgtttccatctctgacctcaagagcggggggatggggggcagcaacacc
aactggaagaccttatacgaagttaaatcggagaacctgggccaaggtgacaaggccgac
tactttagctccgtggcaaccgtggtgtatcttcgcaaagagaactgtatgtaccaggcc
tgcccaactcaggactgcaataaaaaagtgattgatcagcagaatgggttataccgctgc
gagaagtgcgacagtgaatttcccaatttcaagtaccgcatgatcctgtcggtaaatatt
gcagactttcaggagaatcagtgggtgacttgtttccaggagtctgctgaggccatcctt
ggacagaacactgcttaccttggggagctgaaagagaagaacgagcaggcctttgaagag
gttttccagaatgccaacttccgctccttcacgttcaggatcagggtcaaactagagacc
tacaacgatgagtctcgaattaaggccacggtgatggacgtgaagcccgtggactacaga
gagcacgccaggaggctgatcatgaacatcaggaggaacgcggctctgtga
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