Oryctolagus cuniculus (rabbit): 100341540
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Entry
100341540 CDS
T03373
Symbol
PDCD6IP
Name
(RefSeq) programmed cell death 6 interacting protein
KO
K12200
programmed cell death 6-interacting protein
Organism
ocu
Oryctolagus cuniculus (rabbit)
Pathway
ocu03250
Viral life cycle - HIV-1
ocu04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
100341540 (PDCD6IP)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
100341540 (PDCD6IP)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocu04131
]
100341540 (PDCD6IP)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ocu04147
]
100341540 (PDCD6IP)
Membrane trafficking [BR:
ocu04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT associated proteins
100341540 (PDCD6IP)
Exosome [BR:
ocu04147
]
Exosomal proteins
Proteins found in most exosomes
100341540 (PDCD6IP)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRO1
ALIX_LYPXL_bnd
Tex_N
AAT
Motif
Other DBs
NCBI-GeneID:
100341540
NCBI-ProteinID:
XP_008264339
Ensembl:
ENSOCUG00000017800
LinkDB
All DBs
Position
14:20668254..20745247
Genome browser
AA seq
868 aa
AA seq
DB search
MATFISVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSXLRRAALGXPLDK
HEGALETLLRYYDQICSIEPKFPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYEK
SCVLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAFLHIKETVLSALNREPTVDLS
PDTVGTLSLIMLAQAQEVFFLKATRDKMKDAIIAKLANQAADYFGDAFKQCQYKDTLPKE
VFPVLAAKHCIMQANAEYHQSILAKQQKKFGEEIARLQHAAELIKTVASRYDEYVSVKDF
SDKISRALTAAKKDNDFIYHDRVPDLKDLDPIGKATLVKSTPVNVPISQKFTDLFEKMVP
VSVQQSLAAYNQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTK
STSVIEQGGIQTVDKLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTA
SNDLYKPLRAEGSNFRTVLDKAVQADGQVKERYQSHRDTIALLCKPEPELNAAIPSANPA
KTMQGSEVVNVLKSLLTNLDGVKKEREGLENDLKAVNFDMTSKFLTALAQDGVINEEALS
VTELDRVYGGLTSKVQESLKKQEELLRSIQVSHQEFSKMKQSNNEANLREEVLKNLAAAY
DNFVELVANLKEGTKFYNELTEILLRFQNKCSDIVFARKTERDELLKDLQQSIAREPSAP
SIPTPAYQSSPAGGHAPAAPTPAPRTMPPTKPQPPARPPPPVLPANRTPSASAPAPVGTG
TPVPAPSQTPGSAPPPQAQGPPYPTYPGYPGYCQMPMPMGYNPYAYGQYNMPYPPVYHQS
PGQAPFPGPQQPSYPFPQPPQQSYYPQQ
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgttcatctcggtgcagctgaagaagacgtcggaggtggacctggccaagccg
ctggtgaagttcatccagcagacctacccgagcggcggggaggagcaggcccagtactgc
cgcgcggccgaggagctcagcngcctgcgccgcgccgcgctcggcncgccgctggacaag
cacgagggcgcgctcgaaacgctgctgagatattatgatcagatttgttccattgaaccc
aaattcccattttctgaaaatcagatctgcttgacattcacctggaaggatgcttttgat
aaaggttcactttttggaggctctgtaaaattagctcttgcaagcttaggatatgaaaag
agctgtgtgttgttcaattgtgcagccttagctagccagattgcagcagaacagaacctg
gataacgatgaaggattgaaaatcgctgctaagcattaccagtttgctagtggtgccttt
ttacacattaaggagactgtgttatctgccttaaaccgagagcctactgtggacctatct
ccagatactgtcgggaccctcagtcttattatgctggcacaggctcaagaagtatttttt
ttaaaagctacaagagataaaatgaaggatgccatcatagctaagctggctaatcaggct
gcagattattttggcgatgccttcaaacagtgccagtacaaagacactctccccaaggag
gtgttccctgtcttggctgcaaagcactgtatcatgcaggccaatgctgaataccaccag
tctatcctggcaaaacagcagaagaaatttggagaagaaatagcaaggttacagcatgca
gcggaattgattaagacagtggcatctcgctatgatgaatacgtcagtgtaaaggatttt
tctgacaaaatcagccgtgcccttactgcagcaaagaaggataatgacttcatttatcat
gatcgagttccagaccttaaagatctagatcccattggcaaagccacacttgtgaaatct
acccctgtcaatgtacctatcagccagaaatttactgatctgtttgagaagatggttccc
gtgtcagttcaacagtctctggctgcctacaaccagaggaaagctgatttggttaacaga
tcaatcgctcaaatgagagaagccacgactttggcaaatggggtattagcttcacttaat
cttccagcagcaattgaagatgtatctggagatacagtacctcagtctatattgactaag
tccacatctgtgattgaacagggaggcatccagactgttgataagttgatcaaagaacta
cctgaactactacaaagaaatagagaaatcctagatgagtcattaagactactggatgaa
gaagaagcaacagacaatgacttaagagcaaaattcaaggaacgctggcaaaggacagca
tccaatgacctctataagcctttgagagcagagggaagcaacttcagaacagttttagat
aaagctgtgcaagctgatggacaagtgaaagaacgttatcagtctcatcgtgacaccatt
gcgcttctgtgtaagccggagcccgagctgaatgctgccatcccttctgctaacccagca
aagaccatgcagggcagcgaggttgttaatgtcttaaaatccttattgacaaatctcgat
ggcgtaaagaaggagagagaaggccttgagaatgacctgaaagccgtgaattttgacatg
acaagcaagtttttaacagctctggctcaagatggtgtgataaacgaagaagctctttct
gttactgaactggatcgagtctatggaggtcttacgtctaaagtgcaggagtcgctgaag
aagcaggaggagcttcttagaagtattcaggtctcacaccaggaattttcaaaaatgaaa
cagtctaacaatgaagctaacctaagagaagaagttttgaagaatttggctgctgcttat
gacaactttgttgaactcgtagctaatttgaaggagggcaccaagttttacaatgagctg
acggaaattctgctcaggttccagaacaaatgcagtgatatagtgtttgcacggaagaca
gaaagagatgaactcttaaaggacttgcagcagagcattgcccgagaacctagtgctcct
tcaatccctacgcctgcctatcagtcctctccagcagggggacacgcgccagctgctccg
accccagccccgaggaccatgccgcctacaaagccccagccccctgcccggcctccacct
cctgtgcttccagcaaatagaactccttctgcctctgctccggctcctgtgggaactgga
accccagtacctgctccatctcaaacccctggctcggcccctcctccacaggcccagggc
ccaccataccccacctatccaggataccctgggtattgccaaatgcccatgcccatgggc
tataatccttacgcgtacggccagtataacatgccctaccctccagtgtaccaccagagc
ccgggacaggctccgttcccaggaccccagcagccttcctaccccttccctcagccccca
cagcagtcctactatccacagcagtaa
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