KEGG   Oryctolagus cuniculus (rabbit): 100344938
Entry
100344938         CDS       T03373                                 
Name
(RefSeq) transmembrane 9 superfamily member 1
  KO
K17085  transmembrane 9 superfamily member 1
Organism
ocu  Oryctolagus cuniculus (rabbit)
Brite
KEGG Orthology (KO) [BR:ocu00001]
 09190 Not Included in Pathway or Brite
  09193 Unclassified: signaling and cellular processes
   99993 Cell motility
    100344938
SSDB
Motif
Pfam: EMP70 CorA
Other DBs
NCBI-GeneID: 100344938
NCBI-ProteinID: XP_008267649
Ensembl: ENSOCUG00000002895 ENSOCUG00000002904
UniProt: G1SIK4
LinkDB
Position
17:complement(45133986..45142613)
AA seq 606 aa
MTVLGYPRRWSCQWLPVLILLLDTGHRPGVHGATHYKAGDPVILYVNKVGPYHNPQETYH
YYQLPVCCPEKIRHKSLSLGEVLDGDRMAESLYEIRFRENVEKRVLCHMQLSSAQVEQLR
QAIEELYYFEFVVDDLPIRGFVGYMEESGFLPHSHKIGLWTHLDFHLEFHGDRIIFANVS
VRDVKPHSLDGLRSDEVLGLTHTYSVRWSETAVEHRSDRRRGDDGGFFPRTLEIHWLSII
NSMVLVFLLVGFVAVILMRVLRNDLARYNLDEESTSGGSGDDFDQSDNGWKIIHTDVFRF
PPYRGLLCAVLGVGAQFLALGTGIIVMALLGMFNVHRHGAINSAAILLYALTCCISGYVS
SHFYRQIGGERWVWNIILTTSLFSVPFFLTWSVVNSVHWANGSTQALPATTILLLLTVWL
LVGFPLTVIGGIFGKNNASSFDAPCRTKNIAREIPPQPWYKSTLIHMTVGGFLPFSAISV
ELYYIFATVWGREQYTLYGILFFVFAILLSVGACISIALTYFQLSGEDYRWWWRSVLSVG
STGLFIFLYSVFYYARRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISFFSSLKFIRYIY
VNLKMD
NT seq 1821 nt   +upstreamnt  +downstreamnt
atgacagtcctagggtaccctcgacgttggagctgccagtggttgccagtcctgatcctg
ctgctggatacaggccacaggccaggagtgcacggcgcgactcactacaaagccggcgac
cctgtcattctgtatgtcaacaaagtgggaccctaccacaaccctcaggaaacgtatcac
tactatcagctccccgtctgctgccctgagaagattcgtcacaaaagccttagcctgggt
gaagtgctggacggggaccgaatggccgagtctttgtatgagatccgctttcgggagaac
gtggagaagcgagttctgtgtcacatgcagctcagctctgcacaggtggagcagctgcgc
caggccattgaggaactgtactactttgagtttgtggtagatgacctgccaatccgtggc
tttgtgggctacatggaggagagtggattcctgccacacagccacaagataggactctgg
actcatttggacttccacttagaattccatggggatcgaattatatttgccaacgtctca
gtgcgggatgtgaagccccacagtttggatgggctgcgatctgacgaggtgctaggcctc
acccacacttacagcgtacgctggtctgagactgcagtggagcatcggagcgacaggcgg
cgtggtgacgatggcggcttctttccccgaacgctggaaatccattggttgtccatcatc
aactccatggtgctcgtgtttttgctggtgggtttcgtggctgtcattctaatgcgtgtg
cttcggaatgacctggcccgatacaacttggatgaggagagcacctcgggaggctctggt
gacgattttgaccaaagtgacaatggctggaaaattatccatacggatgtcttccgtttc
cctccgtaccgtggtctgctctgtgctgtgcttggcgtgggtgcccagttcctggctctt
ggcactggcatcattgtcatggcgttgctgggcatgttcaatgtgcatcgtcacggggcc
attaactcggcagctatcttgttgtatgccctgacctgctgcatctctggctacgtgtcc
agccacttctaccggcagatcggaggcgagcgttgggtgtggaacatcattctcaccacc
agtctcttctctgtgcctttcttcctgacatggagtgtggtgaactcggtgcattgggcc
aacggctcgacacaggctctgccggccaccaccatcctgctgcttctcacggtttggctg
ctggtgggctttcccctcactgtcattggaggcatcttcgggaagaacaacgctagctcc
tttgatgcaccttgtcgcaccaagaacatcgcccgggagatcccgccccagccctggtac
aagtctactctcatccacatgactgttggaggcttcctgcccttcagcgccatctccgtg
gagctgtactacatcttcgccacagtgtggggtcgggaacagtacacgctgtacggcatc
ctcttctttgtcttcgccatcctgctgagcgtgggggcctgcatctccatcgcgctcacc
tacttccagctgtcgggcgaggactaccgctggtggtggcgctcggtgctcagcgtcggc
tccaccggcctcttcatcttcctctactcggtcttctactacgcccgccgctccaacatg
tcgggggcggtacagacagtggagttctttggctactccttgctcactggctacgtcttc
ttcctcatgctgggcaccatctccttcttttcctccctgaagttcatccgttacatctat
gtaaacctcaagatggactga

KEGG   Oryctolagus cuniculus (rabbit): 100347474
Entry
100347474         CDS       T03373                                 
Name
(RefSeq) charged multivesicular body protein 4c isoform X1
  KO
K24782  charged multivesicular body protein 4C
Organism
ocu  Oryctolagus cuniculus (rabbit)
Pathway
ocu04144  Endocytosis
ocu04217  Necroptosis
Brite
KEGG Orthology (KO) [BR:ocu00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    100347474
  09143 Cell growth and death
   04217 Necroptosis
    100347474
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ocu04131]
    100347474
   03400 DNA repair and recombination proteins [BR:ocu03400]
    100347474
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ocu04147]
    100347474
Membrane trafficking [BR:ocu04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    100347474
DNA repair and recombination proteins [BR:ocu03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    100347474
Exosome [BR:ocu04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   100347474
  Exosomal proteins of colorectal cancer cells
   100347474
SSDB
Motif
Pfam: Snf7 DUF447_C
Other DBs
NCBI-GeneID: 100347474
NCBI-ProteinID: XP_002710707
Ensembl: ENSOCUG00000006847
UniProt: G1SRU4
LinkDB
Position
3:97165926..97192418
AA seq 233 aa
MSKLGKFFKGGGSSKSRAAPSPQEALARLRETEEMLSKKQEYLENRIQRELSLAKKHGTQ
NKRAALQALKRKKRFEKQLTQIDGTLSTIEFQREALENSHTNTEVLRNMGFAARAMKAAH
ENMDLNKIDDLMQEITEQQDIAHEISEAFSQRVGFVDGFDEDELLAELEELEQEELNKKM
TNIRLPNVPSSSLPAQPERKASRVPAAHRSRAASSRRTGEEDDDIKQLAAWAT
NT seq 702 nt   +upstreamnt  +downstreamnt
atgagcaagttgggcaagttctttaaagggggaggctcttctaagagccgcgctgccccc
agcccccaggaggccctggcccgacttcgggagaccgaggagatgttgagcaagaaacag
gagtacctggaaaatcggatccagagagaactctccctggccaagaagcacggcacgcag
aacaagcgagctgccttgcaggccctaaagagaaagaagaggtttgagaagcagctcact
cagattgatggcacgctctccaccatcgaattccagagagaagccttggaaaactcacac
accaacaccgaggtgttaaggaacatgggctttgcagcaagagcaatgaaagcggcccac
gaaaacatggatctgaacaaaatagatgatttgatgcaagagatcacagagcaacaagat
atcgcccacgagatctctgaagcattttctcaacgggtcggatttgttgatggttttgat
gaggatgaactgttggcagaacttgaagaattggagcaggaggaattaaataagaagatg
acaaatatccgacttccaaatgtgccttcctcttctcttccggcacaaccagaaagaaag
gccagcagggttcccgctgcacatcgatcccgagcagcttcttccaggaggacaggagaa
gaagatgatgatatcaaacagttggcagcttgggctacttaa

KEGG   Oryctolagus cuniculus (rabbit): 100347889
Entry
100347889         CDS       T03373                                 
Name
(RefSeq) charged multivesicular body protein 4b
  KO
K12194  charged multivesicular body protein 4A/B
Organism
ocu  Oryctolagus cuniculus (rabbit)
Pathway
ocu03250  Viral life cycle - HIV-1
ocu03272  Virion - Hepatitis viruses
ocu04144  Endocytosis
ocu04217  Necroptosis
Brite
KEGG Orthology (KO) [BR:ocu00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    100347889
   03272 Virion - Hepatitis viruses
    100347889
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    100347889
  09143 Cell growth and death
   04217 Necroptosis
    100347889
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ocu04131]
    100347889
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ocu04147]
    100347889
Membrane trafficking [BR:ocu04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    100347889
Exosome [BR:ocu04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   100347889
  Exosomal proteins of other body fluids (saliva and urine)
   100347889
  Exosomal proteins of colorectal cancer cells
   100347889
SSDB
Motif
Pfam: Snf7 SYF2 Phage_TAC_15
Other DBs
NCBI-GeneID: 100347889
NCBI-ProteinID: XP_002710845
Ensembl: ENSOCUG00000024028
UniProt: G1U2E3
LinkDB
Position
4:complement(13509653..13564370)
AA seq 224 aa
MSVFGKLFGAGGGKAGKGGPTPQEAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHGTK
NKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGYAAKAMKAAH
DNMDIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQEELDKNL
LEISGPETVPLPNVPSIALPSKPTKKKEEEDDDMKELENWAGSM
NT seq 675 nt   +upstreamnt  +downstreamnt
atgtcggtgtttgggaaactgttcggggctggagggggtaaggccggcaagggcggcccg
accccccaggaggccatccagcggctgcgggacacggaggagatgctaagcaagaagcag
gagttcctggagaagaaaatcgagcaggagctgacggctgccaagaagcacggcaccaaa
aacaagcgcgcggccctccaggctctgaagcgcaagaagaggtatgagaagcagctggca
cagatcgacggtacgctgtccaccatcgagttccagcgggaggccctggagaatgccaac
accaacaccgaggtgctcaagaacatgggctacgccgccaaggccatgaaggcagcccac
gacaacatggacatcgataaagtcgatgagctaatgcaggacattgctgaccagcaagaa
cttgcagaggagatttccacagctatttccaaacctgtaggctttggagaagagtttgac
gaggatgaactcatggctgaattggaagaactagaacaggaggagctagacaagaatttg
ctggaaatcagtggacccgaaacagtccctctaccaaatgttccttctatagccctaccg
tcaaaacccaccaagaagaaggaagaggaagacgacgacatgaaggaattggagaactgg
gccggatccatgtaa

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