Oryctolagus cuniculus (rabbit): 100345268
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Entry
100345268 CDS
T03373
Name
(RefSeq) nuclear pore complex protein Nup88
KO
K14318
nuclear pore complex protein Nup88
Organism
ocu
Oryctolagus cuniculus (rabbit)
Pathway
ocu03013
Nucleocytoplasmic transport
ocu05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100345268
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
100345268
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocu03019
]
100345268
Messenger RNA biogenesis [BR:
ocu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
100345268
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup88
FliJ
DUF7344
DUF659
Motif
Other DBs
NCBI-GeneID:
100345268
NCBI-ProteinID:
XP_002718886
Ensembl:
ENSOCUG00000004787
UniProt:
G1SMJ0
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All DBs
Position
19:complement(10434628..10468405)
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AA seq
740 aa
AA seq
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MAAADGVVGDGEPWQTWLPNHAVFLRLREGLKHHSPAEAEKQTSSSLPTSPPQVLTRNLV
FGLCGDLFLWDGESSSFLVVRLRGLRGGGEEPSLSQYQRLLCINPPLFEIYQVLLSPTQH
HVALIGMKGLMVLELPKRWGKNSEFEGGKSTVNCSTTPVAERFFTSSTSLTLKHAAWYPS
EMLDPHIVLLTSDNVIRIYSLREPQTPTKVIVLSEAEEESLILNKGRAYTASLGETAVAF
DFGPLAAVPKNVFGQKGKDEVVAYPLYILYENGETFLCYVSLLHSLGSIGKLLGPLPMHP
AAEDNYGYDACAILCLPCVPNILVIATESGMLYHCVVLEGEEEDDQTSEKSWDSRADLIP
SLYVFECVELELALKLASGEDDPFGSDFSCPIKLHRDPKCSSRYHCTHEAGVHSVGLTWI
HKLHRFLGSDEEDKDSLQELATEQKCFVEHILCTKPLPCRQPAPIRGFWIVPDILGPTMI
CITSAYECLIRPLLSTVHPASPPLLCTREDAEVAASPLRILAETPDSFEKHIRSILQRSA
ANPAFLKSSEKDTAPPPEECLQLISRATQVFREQYILKQDLAKEEIQRRVKLLCDQKKKQ
LEDLSYCREERKSLREMAERLADKYEEAKEKQEDIMNRMKRVLHSFHSQLPVLSDSERDM
KRELQRIPEQLRHLASAIKQVTMKKDYQQRKMERVLSAQKPSITLSAYQRRCIQSILKEE
GEHIREMVKQINDIRNHVNF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcggcagccgatggcgtcgtgggtgacggtgagccgtggcagacctggcttcccaac
cacgccgtgttcctgcggctgcgggagggactgaaacatcacagcccagccgaagccgag
aaacagacgtcgtcatcactgcccacgtcgccgccgcaggtgctgacgaggaacctggtc
ttcggcctctgcggagatctcttcctgtgggacggggaaagcagctcgttcttagtcgtg
cgccttcggggcctccgcggcggcggcgaggagccctccctctcccagtaccagagattg
ctttgcataaacccacccctgtttgaaatctatcaagtcttgttaagtccgacacaacat
catgtagcacttataggaatgaaaggacttatggtattagaattacctaaaagatggggg
aaaaattctgaatttgaaggtgggaaatcaacagtaaattgtagtaccactccagtcgct
gagagatttttcaccagttctacctctctgactctaaagcacgctgcctggtatcccagt
gaaatgctggatccccacatagtgctgttaacgtcggataacgtaataagaatttactct
ctacgtgagccgcagacacccactaaggtgattgtactttcagaagcagaagaagaaagt
ttaatactcaataaaggaagggcatatacagcatcgctaggagagacagcagttgcgttt
gactttggaccactggcagcagtcccaaagaatgtatttggacaaaaaggcaaagatgaa
gtagtggcatacccactgtacatcttatatgagaatggggagactttcctttgttatgtt
agcctgttacacagccttgggagtattggaaagcttttgggtccattgcccatgcatcct
gcagctgaagataactacggttacgatgcctgtgctatactctgcttaccttgtgtcccc
aacatcttagtgatcgctaccgagtcagggatgctgtatcactgcgttgtgctggagggg
gaggaagaggatgaccaaacatcagaaaagtcctgggattccagggccgacctcattcct
tccttgtacgtgtttgaatgtgttgagttggagcttgccctgaaactggcatctggagag
gatgatccctttggttctgacttttcttgtccaatcaaacttcacagagatcccaaatgt
tcatcacggtatcactgtactcacgaagctggtgtacacagtgttgggctaacttggatt
cataaacttcacagatttcttggatcagacgaagaagataaggatagcttacaggaactt
gctacagaacagaagtgttttgtagaacatattctttgtacgaagccattgccatgcagg
cagccggctccaattcgaggattctggatcgtccctgacattctggggcccacgatgata
tgcatcaccagtgcttacgagtgcctcatccggcctctgctaagtactgtccatccggcg
tctccgcccctgctctgtacccgagaggacgccgaagtggccgcgtctcccctccgaatt
ctggccgaaactccggattcctttgaaaaacacatcaggagcatcctgcagcgcagcgcc
gccaatccggcgtttctcaagtcgtctgaaaaggatacggcccctcctccggaggagtgt
ctgcagctcatcagcagagccacgcaggtgttccgggaacagtacatcctgaagcaggac
ctggcaaaggaggagattcagcggagggtcaaattattatgtgaccagaaaaagaagcaa
ctagaagatctcagttactgccgggaggagaggaaaagtctgcgtgaaatggccgagcgc
ttagctgacaagtatgaggaagccaaggagaaacaagaagacatcatgaacaggatgaag
agagtgcttcacagcttccactctcagctccccgttctctccgacagcgagagggacatg
aagagagagctgcagcgcattcctgagcagctccgccatctggccagtgccatcaagcag
gtcaccatgaagaaggactaccagcagcgcaagatggagcgggtgctgagcgctcagaaa
cccagcatcacgctcagcgcctaccagcgccggtgcatccagtccatcctgaaggaggag
ggcgaacacataagagaaatggtcaagcagatcaacgacatccggaaccacgtgaacttc
tga
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