Oryctolagus cuniculus (rabbit): 100346898
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Entry
100346898 CDS
T03373
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
ocu
Oryctolagus cuniculus (rabbit)
Pathway
ocu04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
100346898
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocu04131
]
100346898
Membrane trafficking [BR:
ocu04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
100346898
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
TPR_Vps41
Beta-prop_WDR36-Utp21_1st
TPR_VPS8_2
zf-RING_Vps41
WD40_CDC20-Fz
zf_RING_Vps8_fungal
Clathrin
zf-RING_11
zf-RING_2
zf-C3H2C3
zf-RING_5
zf-RING_UBOX
Beta-prop_WDR3_1st
Beta-prop_WDR5
zf-C3HC4
EIF3I
GED
PHD
Motif
Other DBs
NCBI-GeneID:
100346898
NCBI-ProteinID:
XP_008264810
Ensembl:
ENSOCUG00000002059
LinkDB
All DBs
Position
14:complement(81723659..81996711)
Genome browser
AA seq
1424 aa
AA seq
DB search
MENEPDHESVEQTLCAKTTEEELNKTFNLEASLSKFSYIDLDKELEFKNDLIDDKEFDIP
QVDTPPTLESILNETDDEDDSFVLEDPTLLNIDAIDSHSYDTSSVASSDSGDRTNLKRKK
KLPDSFSLHGSVMRHSLLKGISAQIVSAADKVDAGLPTAIAVSSLIAVGTSHGLALIFDQ
NQALRLCLGSTSVGGQYGAISALSINNDCSRLLCGFAKGQITMWDLASGKLLRSITDAHP
PGTAILHIKFTDDPTLAICNDSGGSVFELTFKRVMGVRTCESRCLFSGSKGEVCCIEPLH
SKPELKDHPITQFSLLAMASLTKILVIGLKPSLKVWMTFPYGRMDPSSVPLLAWHFVAVH
NYVNPMLAFCRGDVVHFLLVKRDESGAIHVTKQKHLHLYYDLINFTWINSRTVVLLDSVE
KLHVIDRQTQEELETVEISEVQLVYNSSHFKSLATGGNVSQALALVGEKACYQSISSYGG
QIFYLGTKSVYVMMLRSWRERVDHLLKQDCLTEALALAWSFHEGKAKAVVGLSGDANKRK
AVVADRMVEILFHYADRALKKCPDQGKIQVMEQHFQDMVPVIVDYCLLLQRKDLLFGQMY
DKLSENSVAKGVFLECLEPYILSDKLVGITPQVMKDLLVHFQDKKLMENVEALIVHMDVT
SLDIQQVVLMCWENRLYDAMIYVYNRGMNEFISPMEKLFKVIAPPLNAGKTLTDEQVIMG
NKLLVYISCCLAGRAYPLGDIPEDLVPLVKNQVFEFLIRLHSAEASPEEEIYPYVRTLLH
FDTREFLNVLALTFEDFKNDKQAVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFLARQL
AKPDNTLFVNRTLFDQVLEFLCSPDDDSRHSERQQVLLELLQAGGIVQFEESRLIRMAEK
AEFYQICEFMYEREHQYDKIIDCYLRDPLREEEVFNYIHNILSIPGHSAEEKQSVWQKAM
DHVEELVSLKPCKAAELVATHFSGQIETVINKLQNQVLLFQFLRSLLDPREGVHVNQELL
QISPSITEQFIELLCQFSPNQVIETLQVLECYRLEETIQITQKYQLHEVTAYLLEKKGDI
HGAFLIMLERLQSKLRGITHQDTKEDPSLKDVEDTMVETIALCQRNSHNLNEQQREALWF
PLLEAMMAPQKLSSPAAPHLQAEALKSLTMQVLNSMAAFIALPSILQRILQDPVYGKGKL
GEIQGLILGMLDTFNYEQTLLETTTSLLNQDLHWSLCNLRASVTRGLNPKQDYCSICLQQ
YKRRQEMADEIIVFSCGHLYHSFCLQNKECTIEVEGQTRWTCYKCSSSNKVGKLSENSSE
VKKGRITPSQVKMSPSYHPSKEDPAVKKASSEPVLDPQQMQAFDQLCRLYRGSSRLALLT
ELSQSRGSESYRPFSGSQSGSAFSSIFQNENFQLQLTPPPVTED
NT seq
4275 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatgaaccagaccatgaaagtgtggaacagaccctctgtgccaagactactgaa
gaagaactgaataagactttcaatctagaagcttcactttcaaaattctcttatatagat
ctggacaaggaactggaattcaaaaatgacttgattgatgacaaggagtttgatattcct
caagttgatacaccaccaacactagaaagcatactaaatgagactgatgatgaagatgat
tcttttgttcttgaggatcctacattgttaaacatcgatgctattgattctcactcctat
gatacttcatctgtggcaagctcagatagtggtgacaggaccaacttaaaaaggaagaaa
aaattacctgattctttttcactccatggatctgttatgcgacattcccttttgaaggga
atttctgcccagatagtgtctgcagctgacaaagtagatgctggcttgcctacagcaatt
gcagtgtccagtctcatagcggtgggaacatctcatggattggctttaatatttgatcaa
aatcaagctttgcgactctgtctgggtagcaccagtgttggaggtcagtatggagccatc
tctgccctcagtattaacaatgactgctcaagacttctttgtggctttgctaaaggacag
atcaccatgtgggatttggccagtggaaaactcctaagatcaataacagatgctcatcct
ccaggaacagctatattgcatatcaagtttacagatgatccaactcttgccatttgcaac
gacagtggaggctctgtttttgaactgacatttaaaagagtgatgggagtgagaacatgt
gaatctagatgtctgttcagtggttccaagggtgaggtttgctgtattgagcctctgcac
tctaagcctgaattgaaggatcatcccatcacccagttttcattattggccatggcatcc
ttaacaaagatactggtcattggattgaaaccctccttgaaagtgtggatgacttttccc
tatggacggatggatccttccagtgttccactgctggcctggcactttgtagctgtgcat
aattatgtgaatcccatgcttgccttctgcagaggagatgttgttcattttctgttggtt
aaaagggatgaatccggagcaatacatgttacgaagcaaaagcatcttcatctgtactat
gacctcatcaacttcacttggataaattcacgaacggttgtgctcttggacagcgtagag
aagttgcatgtgattgatcgacagacgcaagaggagctggaaacagtggagatctcagaa
gttcagttggtctacaacagcagccatttcaaatcgctggccaccggagggaacgtcagc
caggcgctggctttggttggagagaaggcttgttaccaatccatcagtagctatggtggt
cagatcttttatttggggacaaaatctgtttatgtgatgatgctgagaagctggagagag
agagtggatcatcttctgaaacaagattgtcttacagaagccttggctcttgcgtggtct
ttccatgaaggaaaagcaaaagcagtagtgggattatcaggggatgccaacaagcgaaag
gctgttgttgcagatcgcatggtagaaatcctgttccattacgcagatcgagctctgaaa
aagtgcccagaccaggggaaaatccaagtgatggagcagcattttcaggatatggtacct
gtcatagttgattactgccttctgctgcaacgaaaggatcttttatttggccagatgtat
gacaaattaagtgagaattcagtggccaaaggagtgtttttggagtgtcttgagccatat
attttgagtgataaattggtggggatcacaccccaggtaatgaaagacttgcttgttcat
ttccaagataaaaagttaatggaaaatgtggaagcgctcattgtacacatggatgttacc
agcctagacattcagcaggtggttctcatgtgttgggaaaatcgcctgtatgatgctatg
atctatgtctacaacagaggcatgaacgaatttattagtccaatggagaaacttttcaaa
gtaattgctcctcctctgaatgcaggaaaaacacttacagatgagcaagttattatgggc
aacaagcttctcgtatatattagctgttgtctagcaggtcgtgcctatccgttgggtgac
atccctgaagatcttgttcccttggttaaaaaccaggtttttgaatttctaattcgcctg
cattcggcagaagcttcccctgaggaagaaatctatccgtatgtccggactctgctacat
tttgacacaagagaatttctaaatgtattggcgttgacttttgaagattttaaaaatgac
aaacaagctgtggaatatcaacagcgaattgtggatattttgttgaaagttatggtggag
aattctgattttactccctctcaagtaggatgtctcttcacatttctggctcgtcagctt
gcaaagcctgacaatactttgtttgtaaacagaacactttttgatcaggttcttgaattc
ctctgtagtcctgatgatgactctcggcactctgaacgacagcaggtccttttagaattg
ctgcaggctgggggcatagttcaatttgaagagagtcggctcatccgcatggcagaaaaa
gctgagttctaccaaatttgtgaatttatgtatgaacgtgaacatcagtatgacaaaatt
attgattgctacttacgtgacccactgagagaggaggaagtctttaattacattcacaat
atcttatccattcctggacacagtgcagaggagaagcagtctgtatggcagaaggcaatg
gatcacgttgaggagctcgtgtccctgaagccctgtaaagctgcagagctggttgctact
cacttttctggacagattgaaacagtcataaacaaactgcagaaccaggttttgcttttc
caatttttgagaagtcttcttgacccaagggaaggtgttcatgtaaatcaagaattgctg
caaatatctcccagtattacagagcagttcattgaactgttgtgtcaattcagcccaaac
caagttatagagaccctgcaagtccttgagtgctaccgcctagaggaaactattcagatt
actcagaagtatcagcttcatgaggtcactgcttatctgttagaaaagaaaggagacatt
catggagccttcttaataatgctagagagactacaaagcaaacttcgagggataacccat
caagataccaaagaggatccctccttgaaggatgttgaagataccatggtagagacaatt
gctctttgccagagaaattcacataatttgaatgaacagcagcgagaggctttgtggttc
ccattactggaggcaatgatggcccctcagaagctgtccagtcctgctgcacctcacctg
caggctgaggcgctgaaatctttgaccatgcaagtcctaaacagcatggcagcttttatt
gcccttccatccatcctgcaaagaatcttacaggatccagtttatggaaaaggaaaactt
ggagaaatccagggacttattctggggatgttagatacttttaactatgaacagactctg
ctagaaacaactactagccttctaaaccaagatctccactggtcattgtgtaacctgaga
gcatcagtcaccagaggactgaatcccaaacaggactactgctccatatgtttgcagcag
tacaagcgacgccaagaaatggctgatgaaattattgtctttagctgtggccatttgtat
cactcattctgtctacaaaacaaagaatgcaccatagaagttgaaggccaaacaagatgg
acatgttacaaatgcagctcaagtaacaaagtaggaaaactaagtgaaaattcgtctgaa
gttaaaaagggaaggataaccccatcacaggtaaaaatgtcgccatcatatcatccatcc
aaagaggatcctgctgtgaagaaggcaagctcagaacctgttctggatccacagcaaatg
caagcatttgatcagctttgccgtctctatcgagggagttccaggctggctctcctcaca
gagctctcccagagtcgcggcagcgagagctacaggcccttcagcggctcccagagcggc
tccgccttcagcagcatcttccagaacgagaacttccagctgcagctcacgcccccgccc
gtgactgaggactga
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integrated database retrieval system
