Oryctolagus cuniculus (rabbit): 100347540
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Entry
100347540 CDS
T03373
Name
(RefSeq) structure-specific endonuclease subunit SLX4 isoform X1
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
ocu
Oryctolagus cuniculus (rabbit)
Pathway
ocu03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
100347540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ocu04121
]
100347540
03400 DNA repair and recombination proteins [BR:
ocu03400
]
100347540
Ubiquitin system [BR:
ocu04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
100347540
DNA repair and recombination proteins [BR:
ocu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
100347540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slx4
BTB
Motif
Other DBs
NCBI-GeneID:
100347540
NCBI-ProteinID:
XP_008248877
Ensembl:
ENSOCUG00000007367
LinkDB
All DBs
Position
Unknown
AA seq
1743 aa
AA seq
DB search
MDESDDDFQELCASFLQRVKKNGTKQVSGEKKTQKASNGTQIRSKLKKSKQNATKAEPLP
GPAEKKPPPGSLSPRAKKTRKTKSQASDLAVTVNGEARALAPAAHQPGLGERAQGTQTES
VPNGDSQPPPPCLTTAAPNPSKPRTAELVLQRMQQFKRADPARLKHEPEERPPGAAAEGS
VPKSPGEQTAAGNGCEPVLSATDNDATVALALQHEFGQEAASARGDDLEEKGLFFCQICQ
KNLSMMSVARREQHVNRCLDEAEKALRPPAPQIPECPICGKAFLTSKSRASHLKQCAAKM
EVGPQLLLQAVRLQTAQPEGGGHPPTPSFSSPTGGVKRKGTLNKKEPQKRRKADPPEAPS
EDLLVAMALSRSEMEQGPAMPALRLRSAFSERREKKGRKRKPPVSPPQLLVQDRATTGRQ
IEDRVALLLSEEAPLSRTPPLPASRILKEKLRKAGWCLQPPEGKQNSLWEGSALTGAWAV
DAFYTASLVPPIVPQRPAEGLTQEPPRPTRPPEQPESGLEGPPALPSSPGDLSSSASQRE
HQALQDLVDLAREGLSASPRPSSEDLASSGGATGQDGAGCPGLDVVPRGLPPTGFVLPKE
KHLERGDHASLSIGLLVADFSAMVNNPHLSDVQFQVDSGEVLYAHKFVLYARCPLLIQHV
NNEGFCAVEDGDRSQRVLLSDVSAKAVRAFLQYLYTADSSLPPRLAPDLHALALRFGVSD
LMQLCQQASAGVDVEEERQAEKEGEKCESRLESFQELLRSVWVDEEEEAEALSKSEGQEE
DREEVNETEMQEIYEFAATQRRLLQGAAVPDVEDADQLPEDGPGPGQVLARIPRNDELEK
AEQTELAGPGRATASPRRESVRPRVLPPQGQRSAVDSEAGTQEQEAPEDTGGHSSSPTPS
GACWARGEGSLHSVRIHSEEPLLAPTQGGLLQPSQAASDHKERESTIRGREGELSHPPTP
QQAPHPHLSCPPPQPPVVGSPGHSQLHAQHTGPLSGLAHSRLSEAASPRSPSPRACSRQK
RSCSVLMALTEPGLRRGDACSPRLEPRTAGAPAAPATPAASASIDLTQTEPEGSSCQSQS
PPSRSKGDEIILLSDSDEEPEPEQAKIRPASDPPGERELSGISPRSSELFPVIDVDADLE
HSQSPPRRGTGLRQGEEVLSENRGPGHSRGTPWLSCDHESTPDEDSTTDTSSWLVPATPL
ASRSRDCSSQTQILSLRPRTPVAEKTGHAPRASENRAAKGAAQEWSVIVPQTPPASRAPV
TPGAPDSGRRGCRSPPRPQPRRPKRSSPLAPRAIPRGLPDFTWQFPERSPPRPGQPPAAA
ASEVVEVEDSEGEQEAASLPANSSPLPDSDPPGPADSCCWHPEPLSPIPIDDLNLERTGP
LGTSSPCSRTQKSPDSGATPTRGRKSPESSSQAGSPGSERLSFLNSALWDDWDGREKSLE
APPTAQTPGADGTERSGASATPGAHRRKNLPPKVPITPMPRYSILETPVLKKELDRFGVR
PLPKRQMVLKLKEIFQYTHQTLESDSEDEIPPSQVSREAPCSQTYNAETSETSRAGGCTQ
LEAAPGPRPQRAKGPQHGTPQPSGGLPAPGRPPAPEASPGPDGDARLPASQESVATSVDS
SDSSFSSQSSSSAEFGAAFESAGEEEDGVSASQAAVPAAAVEEAVRRYIRSTPALYQKVL
LYQPLELAELQAALRQNGIRVAAGKLLDFLDTHCVTFTTAAARKEKLRGKRLRGVGRKKG
GQK
NT seq
5232 nt
NT seq
+upstream
nt +downstream
nt
atggatgagtcagacgacgattttcaagaactttgcgccagctttctccagagggtgaaa
aaaaatggaaccaagcaggtgtcaggagaaaagaagacacagaaggcctcaaatggcact
cagataagaagcaaactgaaaaagtccaagcaaaacgccaccaaggcagaacccctccca
ggcccagcagagaagaaaccgccacctggcagcctgtcccctcgggctaaaaagacaagg
aaaaccaagtcgcaagcaagtgacctggccgtcactgtgaacggggaggcacgtgcgctc
gctcctgctgcacatcagcctgggctcggggaaagagcgcagggcacccagacagagagc
gttcccaacggcgattcccagccgcctcctccctgcctgaccacagcggcgccaaatccc
tccaaaccccgcacggcagagctggttctgcagcggatgcagcagttcaagagagctgac
cccgcgcgcttgaagcatgagccggaagagcggcctcctggggcggcagccgaaggaagc
gtcccaaagagccctggggagcagacggcagccgggaacgggtgtgagcctgtgctctct
gccacagacaatgacgccacggtggccctggccctgcagcacgagtttgggcaggaagca
gcgtctgcacgtggcgacgacctggaggagaagggcttgttcttctgccagatctgtcag
aagaacctctcgatgatgagtgtggcccggcgggagcagcacgtgaacaggtgcttagac
gaggcggaaaaggcactccgaccacctgcacctcagatccccgagtgccccatctgtggc
aaagcttttctcacctcaaagagcagagcgagccacttgaagcagtgcgcagcgaagatg
gaggtgggcccccagctcctgctgcaggccgtgcggctgcagacagcccagcccgagggc
ggaggacacccgcccacacccagctttagcagccccactggaggtgtgaaacggaaagga
accttgaacaagaaggagccccagaagagaaggaaggccgacccgcccgaggcaccgtcc
gaggacctgctggtggccatggctctgtcccgctccgagatggagcagggccctgccatg
cctgcgctcagactgcggagtgctttctccgagaggagagagaagaaaggtcgcaagagg
aagcccccggtgtcccccccgcagttgctcgtccaggaccgcgcgaccacaggcaggcag
atagaggaccgcgtggccctgctgctgtcagaggaggcgccgctgtcccgcacgccgccg
cttcccgccagcaggattctgaaggaaaagctgagaaaggcaggctggtgcctgcagccg
ccggaagggaagcagaactccctgtgggagggcagcgccctgaccggagcctgggccgtg
gacgccttctacacggccagcctcgtccctcccatcgtgccccagcggcctgccgagggc
ctgacccaggagcctccacgacctacgaggcctcctgagcagccagagtcaggtctggag
gggccacctgctctccccagcagccccggggacctgtcgtcatcggccagccagagggag
caccaggccctgcaggacctcgtggacctggcacgggaggggctgagtgccagcccgagg
cccagcagtgaggacctggccagctccggtggggccacaggccaagacggagctggctgc
ccagggctggatgtggtgccccgcggcctcccgccgaccggctttgtcctgcctaaggag
aagcacctggagcggggcgaccacgcttcgctctccatcgggctgctggttgccgacttc
agcgccatggtcaacaacccgcacctgagcgacgtccagttccaggtggacagcggcgag
gtgctctatgcccacaagtttgtgctttacgcccgatgtccacttctcattcagcatgtg
aacaacgaaggcttctgcgctgtggaagacggggatcggagccagcgcgtcctgctgagt
gacgtgagcgccaaggcggtccgtgcgttcctgcagtacctctacacagcggacagcagc
ctgcctccccgcctggcccctgacctacatgccctggccctcaggttcggcgtgagtgac
ctcatgcagctgtgccagcaggcgtctgccggcgtggacgtggaggaggagcgccaggcg
gagaaggaaggagagaagtgtgagagcagactggagagtttccaggagctgctgaggtcg
gtgtgggtggatgaggaggaggaggcagaggctctgtcgaagtccgagggccaggaagaa
gacagagaagaggtgaatgaaacagaaatgcaggagatttatgaattcgcagctactcag
cgaaggcttctccagggggcagcagtcccagacgtggaggatgctgaccagctccccgag
gacggtccagggcctgggcaggtcctggcacgcatcccgcgcaatgacgagctggaaaag
gcagagcaaacggagctggcagggcctgggagagccacagcctcaccccgcagggagagc
gtgaggccgcgcgttctgcccccacagggccagcgctcagccgtggacagcgaggcaggg
acccaggagcaagaggcaccagaggacacaggcggtcactccagctcccccaccccttct
ggggcctgctgggcaaggggagaaggttccttgcactcggtccgtatccacagtgaggaa
ccgctgctggcaccaactcaaggagggctcttacaaccgtcccaggcagcgagtgaccac
aaggagcgagagagcactatccgggggcgggagggggagctttcccacccccccactccc
cagcaggctccccacccccatctcagctgccccccgccgcagcccccagtcgttgggagt
cctggccactcgcagcttcacgctcagcacacaggcccgctatccggcctggcgcacagc
aggctgtctgaagcggcctccccacgctcgccatcaccacgggcatgctctaggcagaag
aggtcctgcagcgtcctcatggcgctgaccgagccaggcctgcggagaggcgacgcctgc
agtcccaggctggaacccagaaccgcgggggcccctgctgccccggctaccccggccgcg
tcggcatccattgacctcacccagacagagcccgagggttccagctgccagtcccagagt
cctccctccaggagcaagggggatgagattatccttttatcagattcagatgaagagccg
gagccggaacaagccaagatcaggccggcttctgaccccccaggagaaagggagctgtcg
ggaatcagccccaggtcctcggagctgtttcccgtgatcgatgtggacgcagatctggaa
cattcccaaagcccaccgagaagaggaactgggctgcggcagggggaggaggtgctgtca
gagaatcggggccctgggcacagcagggggaccccctggctgtcctgtgaccacgagagc
acccctgatgaggacagcaccacggacacctcatcctggctggtgcccgccacccccctg
gccagcaggagccgcgactgctcatcccagacccaaatcctgagcctcaggcccaggacc
cccgtggctgagaagactgggcacgccccccgggcttcagagaacagggcggcgaaaggg
gccgcacaggagtggtctgtgatcgtgccccagacgccacccgccagccgtgctcccgtc
actccgggggctcccgacagtggcaggcggggctgtcggagcccgccccggcctcagccc
aggcgccccaagcgctcctctccactggcccctcgtgccattccaagaggcctccccgat
ttcacctggcagttcccagaacgctcaccacccaggccgggccagccccctgcggctgcg
gccagcgaagtggtggaagttgaggacagcgaaggggagcaggaggccgcctcccttccg
gcaaacagcagccccctgccggacagtgaccccccagggccagcggacagctgctgctgg
caccctgagcccctctcaccgatcccaattgacgacctgaacctcgagcggacaggcccc
ctgggcaccagcagtccctgcagcaggacccagaagtccccagacagtggtgctaccccc
acccgaggcagaaagtccccagagtcgtcctcacaggccggctccccagggagcgaaaga
ctgagctttctgaattcagctctgtgggacgactgggatggcagagaaaagtcgctggaa
gctcctcccacagcccagaccccaggggccgatggcactgagaggtcaggcgcatcggcg
acaccaggtgctcatcggaggaagaacttgccccccaaagtgcccataacgccaatgcca
aggtactccatcctggagacgccggtgctgaagaaagagctggacaggttcggagtccgc
cctctgcccaaacgccagatggttctgaaactgaaggagatcttccagtacactcaccag
accctggagtcggactcggaggacgagatcccgccctcacaggtgtcccgggaggcaccc
tgcagtcagacctacaacgccgagacctccgagacttccagggcgggaggctgcacccag
ctggaggccgccccgggccccaggccacaaagggccaagggcccccagcatgggacgccg
cagcccagtgggggcctcccagcccctggcagaccaccagcccccgaggcctctccaggc
cctgatggtgacgctcgtctcccagcctcccaggaatccgtggctacctctgtggacagc
agtgacagctccttcagctcacagagctcttcctccgcagagttcggagcggccttcgag
tcggcaggtgaagaggaggacggcgtcagcgcctcccaggcggccgtccccgcagcagcc
gtggaggaggcggtgaggcgctacatccgctccacgccggcgctgtaccagaaggtgctg
ctgtaccagcccttggagctggccgagctgcaggctgccctgaggcagaacggcatccgc
gtggctgcgggcaagctgctggacttcctggacacccactgcgtcaccttcaccaccgcc
gcggcccggaaggagaagctcagggggaagaggctgcggggcgtgggcaggaagaaaggg
gggcagaagtga
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integrated database retrieval system
