Oryctolagus cuniculus (rabbit): 100347578
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Entry
100347578 CDS
T03373
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ocu
Oryctolagus cuniculus (rabbit)
Pathway
ocu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100347578 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocu03019
]
100347578 (MTREX)
03041 Spliceosome [BR:
ocu03041
]
100347578 (MTREX)
03009 Ribosome biogenesis [BR:
ocu03009
]
100347578 (MTREX)
03016 Transfer RNA biogenesis [BR:
ocu03016
]
100347578 (MTREX)
Enzymes [BR:
ocu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100347578 (MTREX)
Messenger RNA biogenesis [BR:
ocu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
100347578 (MTREX)
Spliceosome [BR:
ocu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
100347578 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
100347578 (MTREX)
Ribosome biogenesis [BR:
ocu03009
]
Eukaryotic type
Pre-60S particles
Helicases
100347578 (MTREX)
Transfer RNA biogenesis [BR:
ocu03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
100347578 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
100347578
NCBI-ProteinID:
XP_002714082
Ensembl:
ENSOCUG00000004463
UniProt:
G1SLV3
LinkDB
All DBs
Position
11:complement(18223305..18324260)
Genome browser
AA seq
1040 aa
AA seq
DB search
MADAFGDELFSVFEDDSTTASGTKKDKEKGKWKGPPGSADKAGKRFDGKLQSESTNSGKN
KRDTDIEGTDEPIFGKKPRLEESITEDLSLTDLMPRVKVQSVETVEGCTHEVALPADEDY
LPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREK
QRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEV
MREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQ
PCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQK
GRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEE
VFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFAT
ETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEK
MSPTVGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVV
EKVKNSEEQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKV
KNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKPDE
KGEMQVVPVLVHLLSAISSVRLYIPKDLRPMDNRQSVLKSIQEVQKRFPDGVPLLDPIDD
MGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELKKA
RTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSA
EQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLSSF
KPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENK
FAEGITKIKRDIVFAASLYL
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcgttcggggatgagctcttcagcgtgttcgaggatgactcgaccactgcg
tccggaaccaagaaagacaaggagaaggggaaatggaagggtccgccagggtctgcggac
aaggccgggaaacgatttgatggcaaattacaatcagagtcaactaatagtggaaaaaac
aagagggacacagatatcgaaggcacagatgaacccatttttggaaagaagcccaggtta
gaagagtcaataactgaagacttaagtttgacagacttgatgcccagagtcaaggtgcag
tcagttgaaactgttgaagggtgtacacatgaggttgcacttcctgcagatgaagattat
ttaccacttaaacctcgagttggaaaagccgcgaaggaatatccattcattcttgatgct
tttcaaagagaagccattcagtgtgttgataacaatcagtcagttttagtgtctgcacat
acatcagcaggcaaaactgtatgcgctgaatacgccattgcattagccttaagggaaaaa
cagcgtgtgatatttaccagcccaattaaggcgttgagtaaccagaaataccgtgaaatg
tatgaagaatttcaagacgttggtctgatgactggagatgttactattaatcctacagca
tcttgtctcgttatgaccacagagattttgagaagtatgctttacagaggttctgaagtt
atgcgagaagttgcttgggtcatatttgatgaaattcattatatgagagattcagagcgt
ggtgtagtgtgggaagaaactattattttgcttcctgataatgttcactatgtctttctt
tcggctactattccaaacgcccgacagtttgctgaatggatttgccatttacacaagcag
ccttgccatgtcatttacacagattatcgacctactccattgcaacactacatttttcca
gcaggaggagatggcttgcaccttgtggttgatgaaaatggtgacttcagagaagataat
tttaatactgcaatgcaagtgcttcgagatgcaggtgacttggccaaaggagaccagaaa
ggacggaaaggaggaacaaaagggccatcaaatgtgttcaagattgtgaagatgattatg
gaaagaaattttcaacctgtaattattttcagttttagtaagaaagattgtgaggcctat
gcacttcagatgaccaaattagacttcaacacagatgaggagaagaaaatggttgaggaa
gtattcagtaatgcaattgactgcttatctgatgaagataaaaagctccctcaggttgaa
catgtacttcctcttttgaagcgaggaattggtattcaccatggtggtttacttcctatt
ttgaaggaaactatagagattcttttctcagaaggattgataaaggccttgtttgccaca
gaaacttttgctatgggaattaatatgccagctagaacggttttatttacaaatgcacgt
aaatttgatggaaaggatttccgatggatttcgtctggtgaatacattcagatgtctggt
cgtgctggaaggagaggaatggatgacagaggaattgtaattctgatggtagatgaaaag
atgagcccaacagttggaaagcagctacttaagggctcagctgatcctttaaatagtgct
ttccatttgacctacaacatggttttgaacttactgcgtgtggaagaaattaatccagag
tacatgttggaaaaatccttctaccagtttcaacattatagggcaattccaggagtggta
gagaaggtaaagaactcagaagaacagtataataaaatagtaatacccaatgaagaaagt
gttgtcatctattataagattagacagcagcttgccaagctgggtaaagaaattgaagaa
tatattcataaaccaaaatactgtttaccgtttctacaaccaggtcgtttggtaaaggta
aaaaatgaaggcgatgactttggctggggagtagtggtgaatttttcaaaaaaatcaaat
gttaagcctaattctggtgaattggatcctttatatgtagtagaagtacttctgcggtgt
agcaaagagagtttgaaaaattcagctactgaggcagcaaaaccagcaaaacctgatgag
aaaggagagatgcaggtagtccctgtgttggtgcatctcctgtctgctatcagcagtgtt
aggctttacattcctaaagaccttcggccaatggacaatagacagagtgttttaaaatca
atacaggaagttcagaaacgttttcctgatggtgttcccttgttagatcctattgatgat
atgggcattcaagatcaagggctgaaaaaagtcattcaaaaagtagaggcttttgagcat
cgaatgtactctcatccacttcacaatgatccaaatttggaaactgtgtatacactttgt
gaaaaaaaagcacagattgcaatcgatattaaatctgcaaagcgggagctaaagaaagca
cgaactgtcctacaaatggatgagctcaaatgtcgcaaacgtgttttaagaaggttgggg
tttgctacttcttctgatgtcattgagatgaaaggacgagtggcttgtgagataagcagt
gccgatgagctccttctgactgagatgatgtttaatggccttttcaatgacctttctgca
gaacaggcaacggcattattaagctgctttgtgtttcaagagaattccagtgagatgccc
aaattaactgagcaattagcaggaccacttcgtcaaatgcaggaatgtgctaaaagaatt
gcaaaagtttcagcagaagccaaattggaaatagatgaggaaacttacctaagctcattc
aaacctcacttaatggatgtcgtatatacctgggcaactggagctacattcgcccatatc
tgcaaaatgacagatgtcttcgaaggcagcataattcgttgtatgaggcgcctggaagaa
ctgcttcgacagatgtgtcaggcagcaaaagccattggaaacactgagctggaaaataag
tttgcagaaggaatcaccaaaatcaagagagatattgtgtttgctgccagcctctactta
taa
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