| Entry |
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| Name |
(RefSeq) collagen alpha-1(I) chain isoform X1
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| KO |
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| Organism |
ocu Oryctolagus cuniculus (rabbit)
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| Pathway |
| ocu04933 | AGE-RAGE signaling pathway in diabetic complications |
| ocu04974 | Protein digestion and absorption |
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| Brite |
KEGG Orthology (KO) [BR:ocu00001]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
100347598
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100347598
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100347598
09142 Cell motility
04820 Cytoskeleton in muscle cells
100347598
09150 Organismal Systems
09151 Immune system
04611 Platelet activation
100347598
09152 Endocrine system
04926 Relaxin signaling pathway
100347598
09154 Digestive system
04974 Protein digestion and absorption
100347598
09160 Human Diseases
09161 Cancer: overview
05205 Proteoglycans in cancer
100347598
09172 Infectious disease: viral
05165 Human papillomavirus infection
100347598
09174 Infectious disease: parasitic
05146 Amoebiasis
100347598
09166 Cardiovascular disease
05415 Diabetic cardiomyopathy
100347598
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
100347598
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:ocu00536]
100347598
Glycosaminoglycan binding proteins [BR:ocu00536]
Heparan sulfate / Heparin
Extracellular matrix molecules
100347598
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
19:34954566..35035127
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| AA seq |
1462 aa
MFSFVDLRLLLLLAATALLTHGQEEGQVEGQSEDIPPVTCVQNGVRYSEGEIWKPQTCQI
CVCHKGDVLCDDVICEDTKDCPGAKVLPGECCPVCPEDAGAPTDQETTGVEGPKGDTGPR
GPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQMSYGYDEKSAGVSVPGPM
GPSGPRGLPGPPGSPGPQGFQGPPGEPGEPGASGPMGPRGPPGAPGKNGDDGEAGKPGRP
GERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQM
GPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGAR
GSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQ
GPSGPPGPKGNSGEPGAPGNKGDTGAKGEPGPTGVQGPPGPAGEEGKRGARGEPGPTGLP
GPPGERGGPGSRGFPGADGVAGPKGPAGERGAPGPAGPKGSPGEAGRPGEAGLPGAKGLT
GSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVP
GPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQ
GVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGSNGAPGNDGAKGDAGAPGAPGSQ
GAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDK
GETGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPA
GPAGPAGPPGPIGNVGAPGPKGARGSPGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPV
GKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVV
GLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGSPGAE
GSPGRDGAPGPKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPIGPA
GARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPR
GPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSGGFDFIMP
QPPQEKAGDGGRYYRADDANVVRDRDLEVDTTLKSLSQQIENIKSPEGSRKNPARTCRDL
KMCHSDWKSGEYWIDPNQGCNLDAIKVFCDMDTGATCVYPTQPSIAQKNWYISKNPKEKK
HVWFGESMTDGFQFEYGSEGSDPADVAIQLTFLRLMSTEASQNITYHCKNSVAYMDQQTG
NLKKSLLLQGSNEIELRGEGNSRFTYTVLHDGCTSHTGTWGKTVIEYKTTKTSRLPIIDV
APLDIGAPDQEFGFDVGLACFL |
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| NT seq |
4389 nt +upstreamnt +downstreamnt
atgttcagctttgtggacctccggctcctgctcctcttagcggccaccgccctcctgacg
cacggccaggaggaaggccaagttgagggccaaagcgaagacatcccgccagtcacatgc
gtgcagaacggcgtccggtacagtgaaggcgaaatatggaaaccgcagacctgccagatc
tgcgtgtgccacaagggcgacgtcttgtgcgatgacgtgatctgtgaagacaccaaggac
tgtcccggcgcgaaagtgctccccggcgagtgctgccctgtctgccccgaagacgcggga
gcacccacggaccaggaaaccacaggagtcgagggacccaagggagacactggcccccga
ggcccacggggacccgcaggcccccctggccgcgatggcatccctggacagcccggactt
cccggcccccccggcccccctggacctcccggaccccccggcctcggaggaaactttgct
ccccagatgtcttacggctatgatgagaaatccgctggagtctcggtgcctggccccatg
ggtccctctggtcctcgaggacttcctggcccacctggctcacctggtccccaaggtttc
caaggcccccctggcgagcctggcgagcctggagcttctggtcccatgggtccccgcggt
ccccctggcgcccctggcaagaacggagatgacggagaagctggaaagcccggtcgtcct
ggcgagcgtgggcctcctgggcctcagggtgctcggggcttgcccggaacagctggcctc
cctggaatgaaaggacacagaggtttcagtggtttggatggtgccaagggagatgctggc
cctgctggtcccaagggtgagcctggtagccctggtgaaaacggagctcctggtcagatg
ggcccccgtggtctgcctggcgagagaggccgccctggagcccctggccctgctggtgct
cgtggaaacgatggtgctactggtgctgccggcccccctggtcccactggtcccgctggt
ccccctggcttccctggagctgtcggtgctaagggtgaagctggtccccaaggagcccga
ggctctgaaggtccccagggtgtgcgtggtgagcccggcccccctggccctgctggtgct
gctggccctgctggaaaccctggtgctgatggacaacctggtgctaaaggtgccaatggc
gctcctggtattgctggtgctcctggcttccctggtgcccgaggcccctctggaccccag
ggccccagcggcccccctggtcccaagggtaacagtggtgaacctggtgcccccggcaac
aaaggagacactggtgccaagggagagcccggccccactggtgttcaaggaccccctggc
cctgctggcgaggaaggaaagcgaggagcccgaggtgaacccggacctactggcctgccc
ggaccccctggcgagcgtggtggacctggcagccgtggcttcccaggtgcagatggcgtg
gctggccccaagggtcccgctggtgaacgtggtgctcctggccctgctggccccaaaggc
tctcctggtgaagctggtcgccccggtgaagccggcctgcctggtgccaagggtctcact
ggaagccctggcagccctggtcctgatggcaaaactggcccccctggtcccgctggtcaa
gacggtcgccccggacccccaggcccccctggtgcccgtggtcaggctggtgtgatggga
ttccctggacccaaaggtgccgctggagagcccggcaaagctggagagagaggcgttcct
ggaccccctggcgctgtgggtcctgctggcaaagacggagaagctggagctcagggaccc
cctggacctgctggccccgctggagagagaggtgaacaaggccctgctggctcccctgga
ttccagggtctccctggccccgctggtcctcctggggaagcaggcaaacctggcgaacag
ggtgttcctggagaccttggtgcccccggcccctctggagcacgaggcgagagaggcttc
cctggtgagcgtggcgtgcaaggtcctcctggtcccgctggcccccgcggatccaacggt
gctcctggcaacgatggtgctaagggtgatgctggtgcccctggagctcccggtagccaa
ggcgcccctggccttcagggaatgcccggtgaacgtggtgcagctggtcttccaggcccc
aagggtgacagaggcgatgctggtcccaaaggtgctgatggctctcctggcaaagatggc
gttcgcggcctgactggccccattggtcctcctggccctgctggtgcccctggtgacaag
ggtgaaactggtcccagcggccctgctggtcccactggagctcgtggtgcccctggagac
cgtggtgagcctggtccccccggccctgctggcttcgccggcccccctggtgctgatggc
caacctggtgctaaaggcgagcccggtgacgccggtgctaaaggcgatgctggtcccgct
ggccctgctggtcccgccggtcctcccggtcccattggtaacgttggtgctcctggaccc
aaaggtgctcgtggcagtcctggtccccctggtgctactggtttccctggtgctgctggc
cgagtcggcccccctggcccctccggaaatgctggaccccccggccctcctggtcccgtt
ggcaaagagggcggcaaaggcccccgtggtgagaccggccccgctggacgtcccggtgaa
gttggcccccctggtccccctggccctgctggcgagaaaggatcccctggtgctgacgga
cctgctggtgctcctggcactcccggacctcagggtatcgctggacagcgtggtgtggtc
ggcctgcctgggcagagaggagaaagaggcttccctggtcttcccggcccctctggtgaa
cctggcaaacaaggtccctctggagccagtggtgaacgtggcccccctggtcccatgggt
ccccctggactggctggacctcctggtgaatctggacgtgagggctctcctggcgctgaa
ggctcccctggccgagatggcgctcctggccccaagggtgaccgtggtgagactggcccc
gctggacctcctggtgctcccggtgctcctggtgcccccggccccgtgggccctgctggc
aagagcggcgatcgtggtgagactggtcctgctggtcctgctggtcccatcggccctgct
ggtgcccgtggccctgctggacctcaaggcccccgtggtgacaagggtgagacaggcgaa
cagggcgacagaggcataaagggtcaccgtggcttctccggtctccagggtccccctggc
ccccctggctctcctggtgaacaaggcccctccggagcatctggccctgctggtccccgt
ggaccccctggctctgctggagctcctggcaaagatggactcaacggcctcccaggcccc
attggcccccctggtccccgtggtcgcactggtgacgctggccctgttggtccccccggc
cctcctggacctcccggtcctcctggtccccccagcggcggtttcgacttcatcatgccc
cagccacctcaagagaaggctggggatggcggccgctactaccgggcagatgacgccaac
gtggtccgtgaccgtgacctcgaggtggacaccaccctcaagagcctgagccagcagatt
gagaacatcaagagccccgagggcagccgcaagaaccccgcccgcacctgccgggacctc
aagatgtgccactctgactggaagagcggagagtactggattgaccccaaccaaggctgc
aacctggatgccatcaaggtcttctgcgacatggacactggggcaacctgcgtgtacccc
acacagcccagcattgcccagaagaactggtacatcagcaagaaccccaaggagaagaag
cacgtgtggttcggcgagagcatgaccgatggcttccagttcgagtacggcagcgaaggc
tccgaccccgccgacgtggccatccagctgacgttcctgcgcctcatgtccaccgaggcc
tcccagaacatcacctaccactgcaagaacagcgtagcctacatggaccaacagaccggc
aacctcaagaagtccctgctcctccagggctccaacgagatcgagctgcggggcgagggc
aacagccgcttcacctacactgtcctccacgacggctgcacgagtcacaccggaacctgg
ggcaagaccgtgatcgagtacaagaccaccaagacctcccgcctgcccatcatcgatgtc
gcccccttggacattggcgccccagaccaggaattcggcttcgacgttggccttgcctgc
ttcctgtaa |
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