Oryctolagus cuniculus (rabbit): 100347815
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Entry
100347815 CDS
T03373
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
ocu
Oryctolagus cuniculus (rabbit)
Pathway
ocu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100347815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ocu03041
]
100347815
Spliceosome [BR:
ocu03041
]
Complex A
U1 snRNP components
U1 related factors
100347815
Complex B
100347815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
100347815
NCBI-ProteinID:
XP_051705515
Ensembl:
ENSOCUG00000013239
LinkDB
All DBs
Position
7:81815906..81866862
Genome browser
AA seq
972 aa
AA seq
DB search
MCSGSGRRPSSLSPTMRPGTGAERGGLMVSEMENQPPSRGPGDGEPRLSGSNLCSSSWVS
ADGFLRRRPSMGHPGMHYAPMGMHPMGQRANMPPVPHGMMPQMMPPMGGPPMGQMPGMMS
SVMPGMMMSHMSQASMQPALPPGVNSMDVAAGTASGAKSMWTEHKSPDGRTYYYNTETKQ
STWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELEDLEGYQNTI
VAGGLITKSNLHAMIKAEESSKQEECTTTSAAPVPTTEIPTTMSTMAAAEAAAAVVAAAA
AAAAAAAAANASASTSTSNTVGGTVPVVPEPEVTSIVATVVDNENTVTISTEEQAQLTST
SAIQDQSVEVSSNTGEETSKQETVADFTPKKEEEESQPAKKTYTWNTKEEAKQAFKELLK
EKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKE
SFQRFLENHDKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQAKQ
LRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHI
RALEKEEEEEKQKSLLRERRRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPTISSDIR
FTNMLGQPGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTTFEDFVAIISS
TKRSTTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQAAPPIELDA
VWEDIRERFVKEPAFEDITLESERKRIFKDFMHVLEHECQHHHSKNKKHSKKSKKHHRKR
SRSRSGSDSDDDDSHSKKKRQRSESRSASEHSSSAESERSYKKSKKHKKKSKKRRHKSDS
AESDAEREKDKKEKDRESEKDRTRQRSESKHKSPKKKTGKDSGNWDTSGSELSEGELEKR
RRTLLEQLDDDQ
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atgtgtagcggcagtggccgccggccgagcagtctgagcccgacgatgaggccggggacg
ggagccgagcgtggaggcctcatggtgagtgaaatggagaaccaacctccctcgcggggt
cctggggacggggagccgagattgtccggctccaacctctgctccagctcttgggtttcc
gctgacggcttcctgaggagacggccctcgatggggcaccctggcatgcattatgcccca
atgggaatgcaccctatgggtcagagagcaaatatgcctcctgtacctcatggaatgatg
ccacaaatgatgccccctatgggagggccaccaatgggacaaatgcctggaatgatgtct
tcagtaatgcctggaatgatgatgtctcatatgtctcaggcttccatgcagcctgcttta
ccgccaggggtaaatagtatggatgtggcagcaggtacagcatctggcgcaaaatcaatg
tggactgaacataaatcacctgatggaaggacttactactataatactgaaacaaaacag
tctacctgggagaagccagatgatcttaaaacacctgctgagcaactgttatctaaatgc
ccttggaaggagtacaaatctgattctggaaagccttattattacaattctcaaacaaaa
gaatcccgctgggccaagcctaaagagcttgaggatcttgaaggataccagaataccatt
gttgctggaggtcttattacaaaatcaaacctgcatgcaatgatcaaagctgaagagagc
agtaagcaagaagagtgcaccacaacatcagcagccccggttcctacaacagaaattccg
actacaatgagcaccatggctgctgcagaagcagcagctgctgttgttgcagcagcagcc
gcagcagcagcagctgctgctgcagccaatgccagtgcttccacttctacttctaatact
gtgggtggaactgttccagttgttcctgagcctgaagttacttccattgttgctactgtt
gtagataatgaaaatactgtaactatttcaactgaggaacaagcacaacttactagtacc
tctgctattcaggatcagagtgttgaagtatccagtaatactggagaagaaacatctaaa
caggaaactgtagctgattttactcccaaaaaagaagaggaggaaagccagccagcaaaa
aaaacatatacttggaatacaaaggaggaggcaaagcaagcatttaaagaattattgaag
gaaaagcgggtaccatccaatgcttcatgggaacaagctatgaaaatgatcattaatgat
ccacgatacagtgctttagcaaaattgagtgaaaaaaagcaggcttttaatgcctataaa
gtccagacagaaaaagaggaaaaagaagaagcaagatcgaaatacaaagaggctaaggaa
tcctttcagcgtttccttgaaaatcatgataaaatgacttccacaaccagatacaaaaaa
gcagagcaaatgtttggagagatggaagtctggaatgcaatatctgaacgtgaccgtctt
gaaatctatgaagatgttttgttctttctttcaaaaaaagaaaaggaacaagcaaagcag
ttacgaaagaggaattgggaagccttaaaaaacatacttgacaacatggctaatgtaaca
tattctactacttggtctgaagcccagcagtatctgatggataatccaacgtttgcagaa
gatgaggagttacagaatatggacaaagaagatgcattaatttgctttgaagaacacatt
cgggctttagaaaaggaagaagaagaagaaaaacagaagagtttactaagagaaagaaga
agacagcgtaaaaatagggaatcatttcagatatttttagatgaattgcatgaacatgga
caactgcattctatgtcatcttggatggaattatatcccactattagttctgacattaga
ttcaccaatatgcttggtcagcctggatcaactgcacttgatcttttcaagttttatgtt
gaggatcttaaagcacgttatcatgatgagaaaaagataataaaagacattctaaaggat
aaaggatttgtagttgaagtgaatactacttttgaagattttgtggcaataattagttca
actaaaagatcaactacgttagatgcagggaatatcaagttggctttcaatagtttacta
gaaaaggcagaagcccgtgaacgtgaaagagaaaaagaggaggcccggaagatgaaacgt
aaagaatctgctttcaagagtatgttgaaacaagctgcgcctccaatagagctggatgct
gtctgggaagatatccgggagagatttgtaaaggagccagcatttgaggatataaccctg
gaatctgaaagaaaaagaatatttaaagactttatgcatgtgcttgagcatgaatgtcag
catcaccactcaaagaacaagaaacattctaagaaatctaaaaaacatcataggaaacgt
tcccgctctcgatcagggtcagattcagatgatgatgacagccattcaaagaaaaaaaga
cagcgatcagagtcccgttcagcttcagaacattcttctagtgctgagtctgagagaagt
tataagaagtcaaaaaagcacaagaagaaaagcaagaagaggagacataaatctgactct
gcagaatcagatgctgagcgtgagaaggataaaaaggaaaaagaccgggaaagtgaaaaa
gaccgaactagacaaagatcagaatcaaaacacaaatcacctaagaaaaagactggaaag
gattctggaaattgggatacttctggcagtgaattgagcgaaggggaattagaaaagcgc
agaagaacccttttggagcaactggatgatgatcaataa
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