Oryctolagus cuniculus (rabbit): 100348087
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Entry
100348087 CDS
T03373
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2 isoform X1
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
ocu
Oryctolagus cuniculus (rabbit)
Pathway
ocu03020
RNA polymerase
ocu03420
Nucleotide excision repair
ocu05016
Huntington disease
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
100348087
09124 Replication and repair
03420 Nucleotide excision repair
100348087
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
100348087
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ocu03021
]
100348087
03400 DNA repair and recombination proteins [BR:
ocu03400
]
100348087
Enzymes [BR:
ocu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
100348087
Transcription machinery [BR:
ocu03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
100348087
DNA repair and recombination proteins [BR:
ocu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
100348087
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
100348087
NCBI-ProteinID:
XP_002717206
Ensembl:
ENSOCUG00000016353
UniProt:
G1TBH1
LinkDB
All DBs
Position
15:complement(88869411..88912453)
Genome browser
AA seq
1174 aa
AA seq
DB search
MYDADEDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSML
ARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLS
HLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGM
RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGY
HLRGNEVLYNGFTGRKITSQIFLGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMSV
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtacgacgcggacgaggatatgcaatatgatgaggatgatgatgaaatcactccagat
ttgtggcaagaagcgtgctggattgtcatcagttcctattttgatgagaaaggtctggtc
agacagcaactggattcttttgatgagttcattcagatgtctgttcaaagaattgtggag
gacgctccccccatagatctgcaagctgaagcccagcatgccagcggagaagttgaagaa
ccgccaagatatttgctgaagtttgagcaaatttacctctccaagcctacgcactgggaa
agagatggtgctccttcaccaatgatgccaaatgaagctaggttaagaaatctcacgtat
tctgctccactttatgttgatataacaaaaacagtcatcaaagaaggcgaggaacaactt
cagactcagcatcagaaaacctttataggaaaaatcccaattatgttgcgttcaacttac
tgcctgttgaatggcttgacagatcgtgatctttgtgaattaaatgaatgccctttggat
cctggtggctacttcattattaatggatcagaaaaggttttgattgctcaagagaaaatg
gcaacaaacacagtgtatgtgtttgccaaaaaagattctaaatatgcctacacaggggag
tgtaggtcgtgtttggaaaattcttctcgacccaccagcaccatatgggtgagcatgctg
gcgagaggaggacagggtgcaaaaaagagtgctattggtcagcgcattgtggcaactctc
ccgtacatcaagcaggaagttcccatcatcatcgtgttcagagcattaggctttgtgtct
gacagggatattttagaacatattatttatgactttgaagatccagagatgatggaaatg
gttaaaccttctctggatgaagcttttgtcattcaagaacaaaatgttgcattaaatttc
attggttcaagaggggcaaagcctggtgttactaaggagaaaagaattaagtatgcaaag
gaagtcttacaaaaagaaatgcttccccacgtcggtgtcagtgatttttgtgagacaaag
aaagcctacttcttggggtacatggttcataggttacttctggcggctttgggtagaaga
gaactagatgacagagatcactacggaaataaaagattggaccttgctgggccgcttctt
gcgttcttatttagagggatgtttaagaatttgcttaaagaagtacggatctatgcacag
aagtttattgatcgaggaaaggattttaacttggagttggcaattaaaacaaggattata
tctgatggcctaaagtactctttggctactggaaactggggtgaccagaagaaagcccat
caggccagggctggagtgtctcaggtattaaaccgcctgacttttgcatctactctttcc
cacctgcgtcggttaaattctcctattggcagagatggcaaactggcgaaaccaagacag
ctgcacaacacattgtggggcatggtgtgtccagctgagaccccagagggccatgctgta
ggacttgtgaagaatttagcactgatggcttatatttcagttggctctcagccttctcca
attctggaatttttagaagaatggagtatggaaaatttagaagaaatttctcctgcagct
attgctgatgccaccaagatttttgtcaatggctgctgggttggaatacataaggatcct
gaacagcttatgaacactctgaggaaactgcggcgtcagatggacatcatcgtgtctgaa
gtttctatgatcagagatattcgagagagggagattcgtatctacacagatgcaggccgt
atttgtagaccacttctgattgtggaaaaacaaaagctacttttgaagaagaggcacatt
gaccaattgaaggagagagaatataacaactacagttggcaggatctcgtggccagtggg
gtagtggagtacattgacacgcttgaagaagaaacggtgatgcttgcaatgacgccagac
gatctacaggagaaagaagtggcgtattgctccacatacacacactgcgagattcacccg
tcaatgatccttggtgtctgtgcatctattattccttttcctgatcataaccagtcccct
agaaacacataccagtctgctatggggaagcaggctatgggggtttacatcaccaacttc
cacgttcgaatggacactttggcccacgttctgtattatcctcaaaaaccgcttgtgact
acacggtccatggagtatctgcgtttcagagagctgccagcaggcatcaactcaattgtg
gccatcgcctcatacactgggtataaccaggaagactccgtgattatgaatcgttctgct
gtagaccgaggctttttcaggtctgttttctatcgctcatacaaagaacaggagtcgaaa
aaaggatttgatcaagaagaagtttttgagaaacccacccgtgaaacatgccagggcatg
aggcatgctatttatgacaagctggatgatgatggtttgatagctccaggcgtgcgtgtg
tctggggatgatgttattataggcaagacagtcacattgcctgaaaatgaagatgaactg
gagagtacaaatcgacgctataccaagagagactgtagtactttcctcagaaccagcgag
acgggcatcgtggatcaggtcatggtcactctcaaccaggaaggatataaattttgcaaa
ataagggtacgctctgtcagaattccacagattggagataaatttgctagtcgccatggt
caaaagggtacttgtggtattcagtatagacaagaggacatgcctttcacctgtgaaggc
atcacccctgacatcatcataaatccccatgccatcccctctcgtatgactattggtcac
ttgattgaatgtcttcaagggaaggtatcggccaacaagggtgagattggtgatgccact
ccattcaatgatgccgttaatgtgcagaagatctctaaccttttatcagattacggctac
cacctcagaggaaacgaggtcctgtacaacgggttcactggtcggaaaatcacgtcgcag
atcttcctcggccccacttactaccagcgcttgaagcatatggtggacgacaagatccac
tcccgtgccagaggccccattcagatccttaacagacagcccatggagggccgctctcgt
gatggtggcctgcgttttggagaaatggaacgagactgtcagattgcccatggagcagcc
cagttcctaagagaaaggctgtttgaggcatctgatccctatcaggttcatgtttgcaat
ctgtgtggaatcatggccattgccaacaccaggacccacacgtacgagtgcaggggctgc
cgcaataagacccagatttctttggtgcggatgccgtacgcgtgcaaactgttgtttcag
gaactgatgtccatgagcattgcgcctcgaatgatgagcgtgtag
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integrated database retrieval system
