Oryctolagus cuniculus (rabbit): 100348223
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Entry
100348223 CDS
T03373
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X6
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ocu
Oryctolagus cuniculus (rabbit)
Pathway
ocu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100348223
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocu03019
]
100348223
Messenger RNA biogenesis [BR:
ocu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100348223
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
100348223
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
Motif
Other DBs
NCBI-GeneID:
100348223
NCBI-ProteinID:
XP_002711595
Ensembl:
ENSOCUG00000006911
LinkDB
All DBs
Position
5:complement(14413471..14502663)
Genome browser
AA seq
2375 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPAPHLFAQLSKVLK
LSKVQEVIFGLALLNSSSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGVAKTMMESSLADFMQEVGYGFCASIEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLNFKEVTYE
LDHPGFQIRDSKGLHNVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLINPEIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDPLAGMASL
SIGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTPNQTTAFSGIGGLSSQLPGGL
GTGSLTGIGSGALGLPAVNNDPFVQRKLGTSGLNQPTFQQSKMKPSDLSQVWPEANQHFS
KEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYRF
FPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDRF
KNRLKDYPQYCQHLASINHFMQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQAQ
AQAQVPAKAPLAGQVSTMVTTSTTTTVAKTVTVTRPTGVSFKKDVPPSINTTNIDTLLVA
TDQTERIVEPPENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSI
EPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGM
ITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSVVFRPPNPWTMA
IMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQLSAPKK
DVKQPEELPPITTTTTSTTPATSTTCTATVPPQPQYSYHDINVYSLAGLSPHITLNPTIP
LFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRIAA
HHMMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTASPQQREMMDQAAAQLAQDNCE
LACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLKV
GGVDPKQLAVYEEFARNVPGFLPTNDLSQPTGFLAQPMKQAWATDDVAQIYDKCITELEQ
HLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLDATSGADADLL
LRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQQ
YDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSRGN
APEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWVN
LYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHNP
AANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHDVR
QSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLEL
ISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVLLV
LLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINIA
PRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNLQLINALVLY
VGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHT
HYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNHE
FVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7128 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcacattgtgaatcggcacggt
cctgaggcagacaggcatttattacgctgcctattttcgcatgtggatttcagtggcgat
ggtaaaagtagtggcaaagatttccatcagactcagtttctgattcaggagtgtgcgtcg
ctgattacaaagccaaactttatctcgacgctgtcctatgccattgataatcctttgcac
tatcagaagagtttaaagcctgcaccccacttatttgcccagctgagtaaagttctcaag
ttaagcaaagtgcaagaggtaatttttggccttgccctcttgaattcttcaagttcagat
ctcagaggttttgctgcccagtttatcaaacagaagcttccagatcttctgcgttcctac
attgacgcagacgtcagtggaaatcaagaaggtggcttccaagatatagcaatagaggtt
ctacacctcctcctctcccatctcctttttgggcagaagggagcctttggggttggacag
gaacagatagacgcatttctgaagacactgcgcagagattttcctcaagaacgctgtcct
gtggtgcttgcaccacttttataccctgaaaaacgggacattctaatggacaggatcctg
cctgattctggaggggtagctaaaaccatgatggagagctctttggctgatttcatgcaa
gaagtgggctatggcttttgtgcaagtattgaagaatgtcgcaatataatcatgcagttt
ggtgttcgggaagttacagctgcccaggttgcaagggttttgggaatgatggctcgaact
cattcaggattaacagatggtatcccattacagagtatctctgctcctggcagtgggatc
tggagtgatggaaaagataaaagtgatggagcacaggcacatacatggaatgtagaagtc
ttgattgatgttctcaaagaactgaacccgagtttgaatttcaaggaagtaacttatgaa
ctggaccatcctggatttcaaattcgtgacagtaaagggcttcataatgtggtttatggc
attcaaagaggtttaggtatggaagtcttcccggtagacctcatatatagaccttggaaa
catgcagaaggccagctttctttcattcagcattccctaataaatccagagatcttctgt
tttgctgactatccctgtcatactgttgccactgatatcctgaaagcaccaccagaggat
gacaatcgagaaattgccacatggaagagcttggatttgattgaatctctgctgaggctt
gcagaagttgggcagtatgagcaagtcaaacagcttttcagcttccctatcaaacactgt
ccagacatgctggtattggccttattacaaatcaacacttcttggcacactttgcgccat
gaacttatctccacgctgatgccaattttccttggaaatcatcctaactctgctattatt
ttgcactatgcgtggcatgggcagggacagtctccctcaattcgccaacttatcatgcat
gcaatggcagaatggtacatgagaggggaacagtacgatcaggccaaattgtctcgaata
cttgatgtggcccaggacttgaaggccttgtcaatgctgctaaatggtactccgtttgcc
tttgttattgaccttgctgcgcttgcttcacgtcgtgaatacctcaaactcgacaagtgg
ctcacagataaaattcgagagcatggggagccatttatccaggcttgtatgactttttta
aagagacggtgcccttctattttgggtggacttgctccagagaaagaccagcccaaaagt
gcccaactccctccagaaactctggcaacaatgttggcctgtctacaggcttgtgcaggg
agtgtttctcaggagttatcagaaacgatccttaccatggtagccaattgcagtaatgtt
atgaataaggccagacaaccaccacctggagttatgccaaaaggacgccctcccagtgct
agcagcttagatgccatttctcctgttcagattgaccctcttgctggaatggcatctctt
agtataggtggttcagctgcccctcacacccagagtatgcagggttttcctccaaatttg
ggttctgcattcagtacccctcagtcaccagcaaaagcatttccacccctttcaacccca
aatcagacaactgcgttcagtggtattggaggactttcatcacagcttccaggtggtctt
ggcacaggcagcctgactggtataggatctggggctcttggactgcctgcagtgaataac
gacccttttgtacagaggaaactgggcacctctggattgaaccagcctacattccagcag
agtaagatgaaaccttcggacttgtctcaggtatggcctgaggcaaatcagcactttagt
aaagagatagatgatgaagcaaacagctatttccagcgaatatataatcatccaccacat
ccaaccatgtctgttgatgaggtattggaaatgctacagagatttaaggactctactata
aagagagaacgagaagtatttaactgtatgctaaggaatttgtttgaagaataccgtttt
ttcccccagtacccagataaagagttacatataacagcctgcctgtttggtgggataatt
gaaaaaggactggtcacttacatggcactaggtctagccctgcgatatgttcttgaagcc
ttacgcaagccttttggatctaaaatgtattattttgggattgctgcactagatagattt
aaaaataggttgaaggactatccccagtattgtcaacatttggcttctattaatcacttt
atgcaatttccacatcatttacaggagtacattgagtatggacagcagtctcgagatcct
cctgtgaaaatgcagggctctatcacaacccctggaagtattgcactggcccaggcccag
gcccaggcccaagttccagcaaaagctcctcttgctggtcaggttagcactatggtaaca
acttcaacaaccaccactgttgctaaaacagttacagtcaccaggccaactggagtaagc
tttaagaaagatgtgccaccttctatcaatactacaaatatagatactttgcttgtggcc
acagatcaaactgagagaattgtagaacctccagaaaatatccaagagaaaatcgctttt
atcttcaataatctctcacagtcaaatatgacacaaaaggttgaagaattgaaagaaact
gtgaaggaagaatttatgccttgggtttcgcaatatttggttatgaagagagtcagtatt
gagccaaactttcatagcttgtattcaaacttccttgatacattgaagaatcctgaattt
aacaagatggttttgaatgagacatatagaaacatcaaagtgctcctgacttcagataaa
gctgctgccaatttttcagatcgttctttgttgaagaacttgggacattggttaggaatg
atcacattagctaaaaataaacccatcttacacactgatttggatgttaaatctttgctg
ctagaggcttacgttaaaggacaacaagagttgctctatgtagtgccctttgttgccaaa
gtcttagagtccagcattcgtagtgtggtttttaggccaccaaacccctggacaatggca
atcatgaatgtattagctgagctacatcaggaacatgacttaaagttaaacttgaagttt
gagattgaggtcctctgcaagaaccttgcattagatatcaatgaactaaaacctggaaac
ctcctaaaggataaagatcgcctaaagaacttagatgaacaactctctgctccaaagaaa
gatgttaagcagccagaagaactccctcccatcacaactacaacaacgtctactacacca
gctaccagcactacctgtacagccacagttccaccacagccacagtacagctaccatgac
atcaatgtgtattccctcgcaggcttgtcaccacacattactctgaatccaacgataccc
ttgtttcaggcacatccacagttgaagcaatgtgtgcgtcaagcaattgaacgggccgtc
caggagttggtccatcctgtggtggatcgatcaattaagattgccatgactacttgtgag
caaatagtcaggaaggattttgccctggattctgaagaatctcgaatgcgaatagcagct
catcacatgatgcgtaatttgacagctggaatggctatgattacttgtagggaacctttg
cttatgagcatatctacaaacctgaaaaatagttttgcctcagcccttcgtactgcgtcc
ccacaacaaagggaaatgatggatcaggcagctgctcagttagctcaggacaattgtgaa
ttagcttgctgttttattcagaagactgctgtagaaaaagcaggtcctgagatggacaag
agactagcaactgagtttgaactgagaaaacatgctaggcaagaagggcgcagatactgt
gatcctgttgtattaacatatcaagctgagcggatgccagagcaaatcaggctaaaagtt
ggtggtgtggacccaaagcagctggctgtttatgaagagtttgcacgcaatgtgcctggc
ttcttgcctacgaatgacttaagtcagccgacaggatttttagctcagcccatgaagcaa
gcttgggcaacagatgatgtagctcagatttatgataagtgcattacagagttggagcag
catctgcatgccattccaccaacgttggccatgaatcctcaagctcaggctcttcgaagt
cttttggaggttgtagtgctatctcgaaattctcgagatgctatagctgctcttggattg
ctccagaaggctgtagagggcttactagatgccaccagtggtgctgatgctgacctactg
cttcgctacagggagtgccaccttttggtcctaaaagctctacaggatggccgggcatat
gggtctccatggtgcaacaaacaaatcacaaggtgcctaattgaatgtcgggatgaatat
aaatataatgtggaggctgtggagttgttaattcgcaatcatttggttaatatgcaacag
tacgatcttcatctagctcagtcaatggagaatggtttaaactatatggccgtggcattt
gctatgcaattggtaaaaattctgctggtggatgaaagaagtgttgcccatgttaccgag
gcagatctattccacactattgaaacactcatgaggattaatgctcattccagaggcaac
gctccagaaggattgccccagctgatggaagtagtgcgatccaactatgaagcaatgatt
gatcgtgctcatggaggccctaactttatgatgcattctggaatttctcaagcctcagag
tacgatgaccctccaggcctgagggagaaggcagagtatcttctgagggaatgggtgaat
ctctaccattcagcagcagctggccgtgacagtaccaaagctttctctgcgtttgttgga
cagatgcatcagcaaggaatattgaagactgatgacctcataacaaggttctttcgtctg
tgcactgaaatgtgtgttgaaattagttaccgcgctcaagccgagcagcagcacaatcct
gctgctaaccccacaatgatccgagccaagtgctatcacaacctggatgccttcgtccga
ctcattgcactgctagtgaagcactcaggggaggccaccaacactgtcaccaagattaat
ttgctgaacaaggtccttggtatagtagtgggagttctcttacaagatcatgatgttcgg
caaagtgagtttcagcagcttccctaccatcgaatttttatcatgttactcttggaactc
aatgcacctgagcatgtgttggaaaccattaatttccagacacttacagctttctgcaat
acattccatatcttgaggcctaccaaagctcctggctttgtatatgcctggcttgaactg
atctcccatcggatatttattgcaagaatgctggcacatacgccacagcagaaggggtgg
cctatgtatgcacagctactgattgatttattcaaatatttagcgcctttccttagaaat
gtggaactcaccaaacctatgcaaatcctctataagggtactttaagagtgctgctggtt
cttttgcatgacttcccagaattcctttgtgattaccattatgggttctgtgatgtaatc
ccacccaattgtatccaactaagaaatttgatactgagtgccttcccaagaaacatgagg
ctcccggacccattcacccctaatctgaaggtggacatgttgagtgaaattaacattgct
ccccggattctcaccaatttcactggagtgatgccacctcaattcaaaaaggatttggat
tcttatcttaaaactcgatcaccagtcacttttctgtctgatctgcgcagcaacctacag
gtgtccaatgagcctggcaatcgctacaacctccagctcatcaatgcactggtgctctat
gtagggactcaggccattgcgcacattcacaacaagggcagcacaccttcaatgagcacc
atcacccactcggcacacatggacatctttcagaacctggccgtggacttggatactgag
ggtcgctatctcttcttgaacgcaattgcaaatcagctgcgataccccaatagccacact
cattactttagctgcaccatgctgtacctttttgcagaggccaacactgaagctatccag
gaacagatcacaagggttcttttggaacggttgattgtaaataggccacatccttggggt
cttcttattaccttcattgagctgattaaaaatccagcgtttaagttctggaaccacgag
tttgtacactgtgccccagaaattgagaagctattccagtcggttgcacagtgctgcatg
ggacagaagcaggctcagcaagtaatggaaggcacaggcgccagctag
DBGET
integrated database retrieval system
