KEGG   Oryctolagus cuniculus (rabbit): 100348395
Entry
100348395         CDS       T03373                                 
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB
  KO
K10843  DNA excision repair protein ERCC-3 [EC:5.6.2.4]
Organism
ocu  Oryctolagus cuniculus (rabbit)
Pathway
ocu03022  Basal transcription factors
ocu03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ocu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    100348395
  09124 Replication and repair
   03420 Nucleotide excision repair
    100348395
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ocu03021]
    100348395
   03400 DNA repair and recombination proteins [BR:ocu03400]
    100348395
Enzymes [BR:ocu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     100348395
Transcription machinery [BR:ocu03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     100348395
DNA repair and recombination proteins [BR:ocu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     100348395
SSDB
Motif
Pfam: ERCC3_RAD25_C Helicase_C_3 ResIII Helicase_C DEAD SNF2-rel_dom AAA_22 AAA_34
Other DBs
NCBI-GeneID: 100348395
NCBI-ProteinID: XP_002712461
Ensembl: ENSOCUG00000002248
UniProt: G1SH51
LinkDB
Position
7:114643699..114675686
AA seq 782 aa
MGKRDRADRDKKKSKKRHYEDEEEDDDDAPGNDSQEAVPSAAGKQVDESGTKVDEYGAKD
YRLQMPLKDDHASRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTA
YSLYAAVSVGLQTSDITEYLRKLSKTGVPDGIMQFIKLCTVSYGKVKLVLKHNRYFVESS
HPDVIQHLLQDPVIRECRLRNSEGEATELITETFTSKSAISKTVEGGGGPSTSRVTDPQG
KSDIPTDLFDFYEQMDKDEEEEEETQTVSFEVKQEMIEELQKRCIHLEYPLLAEYDFRND
SVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKR
CLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHTTKRS
WEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDL
NFLIGPKLYEANWMELENNGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNK
FRACQFLIKFHERRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNP
KINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFY
SLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEELAFSTKEEQQQLLQKVLAAT
DLDAEEEVVAGEFGSKSSQASRRFGTMSSMSGADDTVYMEYHSSRSKATTKHVHPLFKRF
RK
NT seq 2349 nt   +upstreamnt  +downstreamnt
atgggcaaaagagaccgggcggaccgcgacaagaagaagtccaagaagcggcactacgag
gatgaggaagaagatgacgacgacgcccctggaaacgactctcaggaggccgtaccctca
gcggccgggaagcaggtggacgagtcgggcaccaaagtggacgagtacggggccaaagac
tacaggctgcagatgcctctcaaggatgaccacgcttccaggcccctctgggtggctcct
gatggccacatcttcttggaagccttctctccagtttacaaatatgcccaagacttcctg
gtggctattgccgagccggtgtgccggccaacccacgtgcatgagtacaagctaactgcc
tactccctgtatgcagctgtcagcgttgggctgcaaaccagtgacatcactgagtacctc
aggaagctcagcaagactggagtccccgatggaatcatgcagtttattaagctgtgtacg
gttagctatgggaaggtcaagctggtcctgaagcataacaggtactttgttgaaagctcg
caccccgatgtcatccagcatcttcttcaggacccagtgatccgggaatgccgcctgagg
aactctgagggggaggccacggagctcatcacagagactttcacgagcaaatctgctatt
tctaagactgttgaaggaggcggcgggccctccacctcccgggtgacagatccacagggt
aaatctgacatccctacggacctgtttgatttctatgagcaaatggacaaggatgaggaa
gaggaggaagagacacagacagtgtcctttgaagtcaaacaggaaatgattgaggagctc
cagaagcgttgcatccacctagagtaccctctgttggctgaatacgacttccggaatgat
tctgtcaaccctgatatcaacattgatctgaaacccacagctgtcctcagaccctaccag
gagaagagcttgcggaagatgtttggcaatgggcgtgcacgttctggggtcattgttctt
ccatgcggtgctgggaagtccctggttggtgtgacggctgcgtgcaccgtcagaaaacgc
tgtctggtgctggggaactcagctgtgtctgtggaacagtggaaagcccagttcaagatg
tggtccaccatcgatgacagccagatttgccgcttcacctccgatgccaaggacaagccc
ataggctgctccgttgccattagcacttactccatgctgggccacaccaccaaaaggtcc
tgggaggctgagcgtgtcatggagtggctcaaaacccaggagtggggcctcatgatcctg
gatgaggtgcacacaataccagccaagatgttccgccgggtgctcaccatcgtgcaggcc
cactgcaagctgggcttgaccgcaaccctcgtccgggaagatgacaagattgtcgactta
aattttctgatcgggcctaagctctatgaagccaactggatggagctggagaacaacggc
tacatcgccaaagtccagtgtgctgaggtttggtgcccaatgtcacccgaattttaccgg
gagtatgtggcaatcaaaaccaagaaacgaatcttgctgtacaccatgaaccccaacaag
ttcagggcttgtcagtttctgatcaagtttcatgaaaggaggaatgacaagattattgtg
tttgctgacaacgtgtttgctctgaaggagtacgccattcggctgaacaaaccctatatt
tatggccccacatcccagggggaaaggatgcagattctccagaatttcaagcacaatccc
aaaatcaacaccatcttcatatccaaggtaggtgacacatcgtttgacctaccagaagca
aatgtcctcattcagatctcatcccatggtggctccaggcggcaggaggcacagaggcta
gggcgggtgctccgagctaaaaaaggcatggtcgcagaggagtacaatgccttcttctac
tcgctggtgtcccaggacacacaggaaatggcttactctaccaaacgccagaggttcttg
gtagatcagggttatagcttcaaggtgatcacaaagctagcgggcatggaggaggaagag
ctggcgttttccactaaagaggagcagcagcagctgttacagaaagtgctggcagccacc
gatctggacgctgaggaagaggtggtggctggagaattcggctccaagtccagccaggca
tcacgccgcttcggcaccatgagttccatgtccggggccgacgacacggtatacatggag
taccactcatcccggagcaaggccaccacgaaacacgtgcaccccctcttcaagcgcttc
aggaagtga

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