Entry |
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Name |
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB
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KO |
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Organism |
ocu Oryctolagus cuniculus (rabbit)
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Pathway |
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Brite |
KEGG Orthology (KO) [BR:ocu00001]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
100348395
09124 Replication and repair
03420 Nucleotide excision repair
100348395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:ocu03021]
100348395
03400 DNA repair and recombination proteins [BR:ocu03400]
100348395
Enzymes [BR:ocu01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
100348395
Transcription machinery [BR:ocu03021]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
100348395
DNA repair and recombination proteins [BR:ocu03400]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
100348395
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SSDB |
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Motif |
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Other DBs |
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LinkDB |
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Position |
7:114643699..114675686
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AA seq |
782 aa
MGKRDRADRDKKKSKKRHYEDEEEDDDDAPGNDSQEAVPSAAGKQVDESGTKVDEYGAKD
YRLQMPLKDDHASRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTA
YSLYAAVSVGLQTSDITEYLRKLSKTGVPDGIMQFIKLCTVSYGKVKLVLKHNRYFVESS
HPDVIQHLLQDPVIRECRLRNSEGEATELITETFTSKSAISKTVEGGGGPSTSRVTDPQG
KSDIPTDLFDFYEQMDKDEEEEEETQTVSFEVKQEMIEELQKRCIHLEYPLLAEYDFRND
SVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKR
CLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHTTKRS
WEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDL
NFLIGPKLYEANWMELENNGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNK
FRACQFLIKFHERRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNP
KINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFY
SLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEELAFSTKEEQQQLLQKVLAAT
DLDAEEEVVAGEFGSKSSQASRRFGTMSSMSGADDTVYMEYHSSRSKATTKHVHPLFKRF
RK |
NT seq |
2349 nt +upstreamnt +downstreamnt
atgggcaaaagagaccgggcggaccgcgacaagaagaagtccaagaagcggcactacgag
gatgaggaagaagatgacgacgacgcccctggaaacgactctcaggaggccgtaccctca
gcggccgggaagcaggtggacgagtcgggcaccaaagtggacgagtacggggccaaagac
tacaggctgcagatgcctctcaaggatgaccacgcttccaggcccctctgggtggctcct
gatggccacatcttcttggaagccttctctccagtttacaaatatgcccaagacttcctg
gtggctattgccgagccggtgtgccggccaacccacgtgcatgagtacaagctaactgcc
tactccctgtatgcagctgtcagcgttgggctgcaaaccagtgacatcactgagtacctc
aggaagctcagcaagactggagtccccgatggaatcatgcagtttattaagctgtgtacg
gttagctatgggaaggtcaagctggtcctgaagcataacaggtactttgttgaaagctcg
caccccgatgtcatccagcatcttcttcaggacccagtgatccgggaatgccgcctgagg
aactctgagggggaggccacggagctcatcacagagactttcacgagcaaatctgctatt
tctaagactgttgaaggaggcggcgggccctccacctcccgggtgacagatccacagggt
aaatctgacatccctacggacctgtttgatttctatgagcaaatggacaaggatgaggaa
gaggaggaagagacacagacagtgtcctttgaagtcaaacaggaaatgattgaggagctc
cagaagcgttgcatccacctagagtaccctctgttggctgaatacgacttccggaatgat
tctgtcaaccctgatatcaacattgatctgaaacccacagctgtcctcagaccctaccag
gagaagagcttgcggaagatgtttggcaatgggcgtgcacgttctggggtcattgttctt
ccatgcggtgctgggaagtccctggttggtgtgacggctgcgtgcaccgtcagaaaacgc
tgtctggtgctggggaactcagctgtgtctgtggaacagtggaaagcccagttcaagatg
tggtccaccatcgatgacagccagatttgccgcttcacctccgatgccaaggacaagccc
ataggctgctccgttgccattagcacttactccatgctgggccacaccaccaaaaggtcc
tgggaggctgagcgtgtcatggagtggctcaaaacccaggagtggggcctcatgatcctg
gatgaggtgcacacaataccagccaagatgttccgccgggtgctcaccatcgtgcaggcc
cactgcaagctgggcttgaccgcaaccctcgtccgggaagatgacaagattgtcgactta
aattttctgatcgggcctaagctctatgaagccaactggatggagctggagaacaacggc
tacatcgccaaagtccagtgtgctgaggtttggtgcccaatgtcacccgaattttaccgg
gagtatgtggcaatcaaaaccaagaaacgaatcttgctgtacaccatgaaccccaacaag
ttcagggcttgtcagtttctgatcaagtttcatgaaaggaggaatgacaagattattgtg
tttgctgacaacgtgtttgctctgaaggagtacgccattcggctgaacaaaccctatatt
tatggccccacatcccagggggaaaggatgcagattctccagaatttcaagcacaatccc
aaaatcaacaccatcttcatatccaaggtaggtgacacatcgtttgacctaccagaagca
aatgtcctcattcagatctcatcccatggtggctccaggcggcaggaggcacagaggcta
gggcgggtgctccgagctaaaaaaggcatggtcgcagaggagtacaatgccttcttctac
tcgctggtgtcccaggacacacaggaaatggcttactctaccaaacgccagaggttcttg
gtagatcagggttatagcttcaaggtgatcacaaagctagcgggcatggaggaggaagag
ctggcgttttccactaaagaggagcagcagcagctgttacagaaagtgctggcagccacc
gatctggacgctgaggaagaggtggtggctggagaattcggctccaagtccagccaggca
tcacgccgcttcggcaccatgagttccatgtccggggccgacgacacggtatacatggag
taccactcatcccggagcaaggccaccacgaaacacgtgcaccccctcttcaagcgcttc
aggaagtga |