KEGG   Oryctolagus cuniculus (rabbit): 100348498
Entry
100348498         CDS       T03373                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
ocu  Oryctolagus cuniculus (rabbit)
Pathway
ocu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ocu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100348498
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ocu03041]
    100348498
Spliceosome [BR:ocu03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    100348498
 Complex C
   U5 SnRNP specific factors
    100348498
SSDB
Motif
Pfam: WD40 WD40_Prp19 Beta-prop_TEP1_2nd WD40_CDC20-Fz WD40_WDHD1_1st EIF3I Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 WDR90_beta-prop_4th Beta-prop_SCAP WD40_MABP1-WDR62_1st ANAPC4_WD40 Beta-prop_EIPR1 Beta-prop_SPT8 Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_WDR75_2nd Beta-prop_WDR19_1st Beta-prop_Vps41 eIF2A Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Beta-prop_RIG_1st Cytochrom_D1 WD40_like WDR54 Beta-prop_Nup120_160
Other DBs
NCBI-GeneID: 100348498
NCBI-ProteinID: XP_002716107
Ensembl: ENSOCUG00000014588
LinkDB
Position
13:134972251..135005047
AA seq 358 aa
MIEQQKRKGPELPLVPVKRQRHELLLGAAGSGPGTGQQQATPGALLQAGPPRCSSLQAPI
MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT
DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW
DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT
GLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK
IAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSDKRLYMGEIQ
NT seq 1077 nt   +upstreamnt  +downstreamnt
atgatagaacagcagaaacgaaaaggcccagagttgccgctggtcccagtcaagcggcag
cgccatgagttgctgttgggagcggcggggtcgggccccggaacagggcagcagcaagca
acgccgggagctttgctgcaagcggggcctccaaggtgttcctcccttcaagccccaatc
atgctgctctcaggacatgaaggagaggtgtactgctgcaagtttcatcccaatggatcc
acccttgcatctgcaggatttgaccgactgatattgttgtggaatgtctatggtgactgt
gataactatgccacactgaagggacacagtggagcagtgatggagctgcattataacaca
gacggcagtatgctcttctcagcatccacagataaaactgtggcagtgtgggatagtgaa
acaggcgagagagttaaaaggctgaaaggacatacttcctttgtgaattcctgttaccca
gccaggagaggcccccagcttgtctgcactgggagtgacgatggtacagttaagctttgg
gatatccggaagaaagcagccatccagacatttcagaacacataccaagtgttagctgtg
accttcaatgacacaagtgatcagattatttctggtggaatagacaatgatatcaaggtc
tgggacctacgccaaaacaagctaacctacaccatgagaggccatgcagattcagtgact
gggttaagtttaagttctgaaggctcttatctcttgtccaatgcaatggacaatacagtg
cgggtctgggacgtccggccttttgcccccaaagagaggtgtgtgaagatatttcaagga
aacgtgcacaactttgaaaagaatcttctgagatgttcttggtcacctgatggaagcaaa
atagcagctggctcagctgacaggtttgtgtatgtgtgggataccacgagcaggagaata
ctgtataagctgcctggccatgctggctccatcaatgaagtggctttccatcccgacgag
cccatcattctgtcggcatccagtgacaagagactgtacatgggggagatccagtga

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