KEGG   Oryctolagus cuniculus (rabbit): 100348734
Entry
100348734         CDS       T03373                                 
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
  KO
K12828  splicing factor 3B subunit 1
Organism
ocu  Oryctolagus cuniculus (rabbit)
Pathway
ocu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ocu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100348734
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ocu03041]
    100348734
   03036 Chromosome and associated proteins [BR:ocu03036]
    100348734
Spliceosome [BR:ocu03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    100348734
 Complex B
    100348734
 Complex C
   U2 SnRNP specific factors
    100348734
Chromosome and associated proteins [BR:ocu03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    100348734
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT_EF3_N HEAT_ECM29 Htt_N-HEAT_1 HEAT_2 XMAP215_CLASP_TOG DUF2298 TALPID3
Other DBs
NCBI-GeneID: 100348734
NCBI-ProteinID: XP_008257092
LinkDB
Position
7:35673042..35716472
AA seq 1371 aa
MLRKLFSSPETPLNLDKGGCSVTCHSTERAPAWRTRREQSQLFFSVAAATSGSAWERQFR
LCVRVDKMAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAG
YVTSIAATELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIA
DREDEYKKHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLA
EKAKAGELKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWD
ETPGRAKGSETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRW
DETPKTERDTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVL
TPGKTPIGTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYK
VLPPPAGYVPIRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQ
YFDKLLVDVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFN
QILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG
REIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCK
SKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALA
EAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLIL
IREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQL
VDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLI
DGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAAD
LISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPI
KDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAI
RRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALM
NEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQ
HMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQG
LFHPARKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL
NT seq 4116 nt   +upstreamnt  +downstreamnt
atgctaagaaagcttttctccagccccgagacgcctttgaatttggacaaaggtggctgc
tctgtcacgtgtcattcgacggagcgcgctcccgcttggcgcacgcgcagagagcagtcc
cagctatttttctccgtggcggcggcgacgagcggaagtgcttgggagcgccagttccgt
ctgtgtgttcgagtggacaaaatggcgaagatcgccaagactcacgaagatattgaagca
cagattcgagaaattcaaggcaagaaggcagctcttgatgaagctcaaggagtgggcctt
gattctacaggttattatgaccaggaaatttatggtggaagtgacagcagatttgctggc
tatgtgacatcaattgctgcaactgaacttgaagatgatgacgatgactactcatcatct
acaagtttgcttggtcagaagaagccaggatatcatgctcctgtggcactgcttaatgat
ataccacagtcaacagaacagtatgatccatttgctgagcaccgacctccgaagatcgca
gaccgggaggatgaatacaaaaagcacaggcggaccatgataatttccccagagcgtctt
gatcctttcgcagatggagggaagacccctgatcctaaaatgaatgctaggacttacatg
gatgtaatgcgagaacagcatttgactaaagaagagagagaaattaggcaacaactagca
gaaaaagctaaagctggagaactaaaagtcgtcaatggagcagcagcatcccagcctccc
tcaaaacgaaaacggcgttgggatcaaacagctgatcagacccctggtgctacccctaaa
aaactgtcaagttgggatcaggcagagacccctgggcataccccttccctgagatgggat
gagacaccaggacgtgcaaagggaagtgagactcctggagcaacaccaggctcaaaaata
tgggatcctacacctagtcacacaccagcgggagctgctactcctggacgaggcgatacc
ccaggtcacgccacaccaggccatggaggtgcaacttccagtgctcgtaaaaacagatgg
gatgaaacccccaaaacagaaagagatactcctgggcatggaagtggttgggctgaaaca
ccgcgaacagatcgaggtggagattcaattggtgaaacaccaactcctggagccagtaaa
agaaagtcacgttgggatgaaacaccagccagtcaaatgggtggaagcactcctgttcta
acccctggaaaaacaccaattggcacaccagccatgaacatggctactcctaccccaggt
cacataatgagtatgactcctgaacagcttcaggcttggcgatgggagagggagattgat
gagcgaaatcgcccactttctgatgaagaattggatgctatgttcccagaaggatataag
gtacttccccctccagctggttatgttcctatcagaactccagctcgaaagctgacagca
actccaacaccattgggtggtatgactggtttccacatgcaaactgaagatagaactatg
aaaagtgttaatgatcagccatctggaaatcttccatttttaaaacctgatgatattcag
tactttgataaactattggttgatgttgatgaatcaacacttagtccagaagagcaaaaa
gagagaaaaataatgaagttgcttttaaaaattaagaacggaacacctccaatgagaaag
gctgcattgcgtcagattactgataaagcccgggagtttggagctggtcctttgtttaat
cagattcttcctctcttgatgtctcctacacttgaggatcaggagcgtcatttacttgtg
aaagttattgacagaatattgtacaaacttgatgacctcgttcgaccatatgtgcataag
atccttgtggtcattgaaccattattgattgatgaagattactatgctagagtggaaggc
cgagagattatttctaatttggcaaaggctgctggtctggctactatgatctctaccatg
agacctgatatagataacatggatgaatatgtccgtaacacaacagctagagcttttgct
gttgtagcctctgccctgggcattccttctttattgcccttcttaaaagctgtgtgtaaa
agcaagaagtcctggcaagcaagacacactggtattaagattgtacagcagatagctatt
ctgatgggctgtgctatcttgccacatctcagaagtttagttgaaatcattgaacacggt
cttgtggatgagcagcagaaagtacgaaccatcagtgctttggccattgctgccttagct
gaggcagcgactccttatggtatcgaatcttttgactctgtgttaaagcctctgtggaag
ggtattcgccaacacagaggaaagggtttggctgctttcttaaaggctattggatatctt
attcctctcatggatgcagaatatgccaactactatactagagaagtgatgttaattctt
attcgagaattccaatctcctgatgaagaaatgaagaaaattgtgctgaaggtggtgaaa
cagtgttgtggaacagatggtgtagaagcaaactacattaagacagagattcttcctccc
ttttttaaacacttttggcagcacagaatggctttggatagaagaaattaccgacagtta
gttgatactactgtggagttggcaaacaaagtaggtgcagctgaaattatatccaggatt
gtggatgatctgaaagatgaagctgaacagtacagaaaaatggtgatggagacaattgag
aaaatcatgggcaacttgggagcagcagatattgatcataaacttgaagaacaactgatt
gatggtattctttatgctttccaagaacagaccacagaggactcagtaatgttgaatggc
tttggcacagtggtcaatgcacttggtaaacgagtcaaaccatacttgcctcagatctgt
ggtacagttttgtggcgtttaaataacaaatccgccaaagttaggcaacaggcagctgac
ttgatttctcgaactgctgttgttatgaagacttgtcaagaggaaaaattgatggggcac
ttgggtgttgttttatatgaatatttgggtgaagagtaccctgaagtattgggcagcatt
cttggagcactgaaggccattgtaaatgtaataggtatgcataagatgaccccaccaatt
aaagatctgcttcctagactcacccccatcttaaagaacaggcatgaaaaagtacaggag
aattgtattgatcttgttggacgtattgctgacaggggagctgagtatgtgtctgcaaga
gaatggatgaggatttgctttgagcttttggagctcttaaaagctcacaaaaaagctatt
cgtagagcaacagtcaacacatttggttatattgcgaaggctattggtcctcatgatgta
ttggctacacttctgaacaacctcaaagtacaagaaaggcagaacagagtttgtaccact
gtagcaatagctattgttgcagaaacgtgttcacctttcacagtactccctgccttaatg
aatgaatacagagttcctgaactgaatgttcaaaatggagtattaaaatctctttccttc
ttgtttgaatatattggtgaaatgggaaaagactacatttatgcggtaacaccattactt
gaagatgctttaatggatagggaccttgtacacaggcagacagctagtgcagtggtacag
cacatgtcacttggggtttatggatttggttgtgaagattcactgaaccacctgttgaac
tacgtatggcctaatgtgtttgagacatcgcctcatgtaattcaggctgttatgggagct
ctggagggtctgagagtcgctattggcccgtgtagaatgttgcaatattgtttacagggt
ctgtttcacccagcccggaaagtcagagatgtgtattggaaaatttacaactccatctac
attggttcacaagatgctctcatagcacattacccaagaatctacaatgatgataagaac
acttacattcgttatgaacttgactatatcttataa

DBGET integrated database retrieval system