KEGG   Oryctolagus cuniculus (rabbit): 100349019
Entry
100349019         CDS       T03373                                 
Name
(RefSeq) transcription initiation factor TFIID subunit 5
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
ocu  Oryctolagus cuniculus (rabbit)
Pathway
ocu03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:ocu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    100349019
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ocu03021]
    100349019
   03036 Chromosome and associated proteins [BR:ocu03036]
    100349019
Transcription machinery [BR:ocu03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     100349019
   Coactivators
    SAGA/TFTC/STAGA complex
     100349019
Chromosome and associated proteins [BR:ocu03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     100349019
    STAGA complex
     100349019
    TFTC complex
     100349019
    SAGA complex
     100349019
    SLIK complex
     100349019
SSDB
Motif
Pfam: WD40 WD40_Prp19 TFIID_NTD2 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_EML_2 WD40_MABP1-WDR62_2nd Beta-prop_WD40_POC16_2nd Beta-prop_EML WDR55 NBCH_WD40 WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st ANAPC4_WD40 Beta-prop_SCAP Beta-prop_IFT122_1st WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_IFT140_1st Beta-prop_Vps41 Beta-prop_EIPR1 Beta-prop_DCAF4 Nup160 WD40_RFWD3 Beta-prop_HPS5 Beta-prop_WDR19_1st Beta-prop_SPT8 WD_LRWD1 Beta-prop_DCAF12 PEP5_VPS11_N RAB3GAP2_N CDK5RAP3 Beta-prop_RIG_1st eIF2A Cytochrom_D1 ABM-like PROPPIN
Other DBs
NCBI-GeneID: 100349019
NCBI-ProteinID: XP_008268663
Ensembl: ENSOCUG00000006303
LinkDB
Position
18:48190847..48207663
AA seq 800 aa
MAALAEEQTEVAVKLESEGPPTLLPPQAGDGTGEGTVGITNNGPNGSGGNVAAASSAGGD
GGTPKPAVAVSAAAPAGAAPVPAAASEAGAPHDRQTLLAVLQFLRQSNLREAEEALRREA
RLLEEAVAGSGAPGEVDGAGAEAASSLLSRVTASAPGPAAPDPPGTGASGATVVSGSASG
PAAPGKVGNVAVEDQPDVSAVLSAYNQQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLF
YPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDF
RTSKFVLRISRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLA
GEAKREANKSKVFFGLLKEPEIEVPLDDEDEEGENEEGKPKKKKPRKDSVGSKSKKQDPN
APPQNRIPLPELKDSDKLDKIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLTAVDVTD
DSSLIAGGFADSTVRVWSVTPKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILY
GHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYF
VSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGN
CVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFS
RDGEILASGSMDNTVRLWDAIKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPV
VHLHFTRRNLVLAAGAYSPQ
NT seq 2403 nt   +upstreamnt  +downstreamnt
atggcggcgctggcggaggagcagacggaggtggcggtcaagctagagtctgagggacca
ccgacgctgctacctccgcaggcgggtgacggcacaggcgagggcaccgtcggcattacc
aacaacggccccaacggcagtggcgggaacgttgcggcggcgtcgtcggccggcggggat
ggcgggacccccaagcccgcggtggctgtctccgctgctgccccggcgggggcggctccg
gtacctgccgctgcctcggaggctggtgctccccacgaccgacagactctgctggcggtg
ctgcagtttctacggcagagcaacctccgcgaggccgaagaggcgctgcgccgcgaggcc
cggctgctggaagaggcagtagcgggctccggagccccgggagaggtggacggcgccggc
gctgaggcggctagctcgcttctcagccgggtcaccgcctcggcccccggcccggcggcc
cccgaccctccgggcaccggcgcttcgggggcgacggttgtctccggctcagcctcaggt
cctgcggctccggggaaagttggaaatgtcgctgtggaagaccaaccagatgtcagtgct
gtgttgtcggcctacaaccaacaaggagatccgacaatgtatgaagaatactatagtgga
ctcaaacacttcattgaatgttctttggactgccatcgggcagagttatcccaactcttt
tatcctctgtttgtgcacatgtacttggagctggtctacaatcaacatgagaatgaagca
aaatcattctttgagaagttccatggagatcaggaatgttattaccaggatgacctacga
gtattatctagtcttaccaaaaaggaacacatgaaagggaatgagaccatgttggatttt
cgaacaagtaaatttgttctgcgtatttcccgtgactcgtaccaactcttgaagaggcat
cttcaggagaaacagaacaatcagatatggaacatagttcaggagcacctctacattgac
atctttgatgggatgccgcgtagtaagcagcagatagatgcgatggtgggaagtttggca
ggagaggctaaacgagaggcaaacaaatcaaaggtattttttggtttattaaaagaacca
gaaattgaggtgcctttggatgatgaggatgaagagggagaaaatgaagaaggaaaacct
aaaaagaagaagcctagaaaagatagtgttggatccaaaagtaaaaagcaagatcccaat
gctccacctcagaacagaatccctcttcctgagttgaaagactcagataagttggataag
ataatgaatatgaaagaaaccaccaaacgagtgcgccttggaccagactgtttaccatct
atttgtttctatacattcctcaatgcttaccagggcctcactgcagtggatgtcactgat
gattctagtctgattgctggaggttttgcagattcaactgtcagagtgtggtctgtgaca
cccaaaaagcttcgcagtgtcaagcaagcatcagatcttagcctcatagacaaagaatcg
gatgatgtcttagaaagaatcatggatgagaaaacagcaagtgagttgaagattttgtat
ggccacagtgggcctgtctatggagccagcttcagtccggataggaactatctgctttct
tcttcagaggatggaactgtccgattgtggagccttcaaacatttacttgtttggtagga
tataaaggacacaactacccagtatgggacacacagttttctccatatggatattatttt
gtgtcagggggtcacgaccgagtagctcggctgtgggctacagaccactatcaacctcta
aggatatttgctggccatcttgctgatgtgaattgtaccagattccatccaaattctaat
tacgttgctacgggttctgcagacagaactgtgcggctctgggatgtcttaaacggtaac
tgtgtaaggatcttcactggacacaagggaccaattcattccttgacattttctcccaat
gggagattcctggctacaggagcaacagatggcagagtactcctttgggatattggacat
ggcttgatggttggagaattaaaaggccacactgatacagtctgttcacttaggttcagt
agagatggtgaaattttggcatcaggttcaatggacaatacagtccggttatgggacgct
atcaaagcatttgaagatttagagactgatgactttactacagccactgggcatataaat
ttacctgagaattcacaggagttattgctgggaacatatatgaccaaatcaacaccagtt
gtacacctccattttactcgaagaaacctggttctagctgcaggagcttatagtccacaa
taa

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