KEGG   Oryctolagus cuniculus (rabbit): 100349294
Entry
100349294         CDS       T03373                                 
Name
(RefSeq) protein SEC13 homolog
  KO
K14004  protein transport protein SEC13
Organism
ocu  Oryctolagus cuniculus (rabbit)
Pathway
ocu03013  Nucleocytoplasmic transport
ocu04141  Protein processing in endoplasmic reticulum
ocu04150  mTOR signaling pathway
ocu05014  Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:ocu00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    100349294
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    100349294
 09130 Environmental Information Processing
  09132 Signal transduction
   04150 mTOR signaling pathway
    100349294
 09160 Human Diseases
  09164 Neurodegenerative disease
   05014 Amyotrophic lateral sclerosis
    100349294
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ocu03019]
    100349294
   04131 Membrane trafficking [BR:ocu04131]
    100349294
Messenger RNA biogenesis [BR:ocu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     100349294
Membrane trafficking [BR:ocu04131]
 Protein recycling
  Rab GTPases and associated proteins
   Rab11 associated proteins
    100349294
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Coat protein complex II (COP-II)
    100349294
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    100349294
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 WD40_MABP1-WDR62_2nd WDR55 Beta-prop_IFT122_1st Beta-prop_RIG_2nd ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd EIF3I Beta-prop_WDR75_1st Beta-prop_WDR19_1st Beta-prop_Vps41 Beta-prop_EML NBCH_WD40
Other DBs
NCBI-GeneID: 100349294
NCBI-ProteinID: XP_008248147
LinkDB
Position
Unknown
AA seq 322 aa
MVSVINTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILVADLRGHEGPV
WQVAWAHPMYGNILASCSYDRKVIIWKEEGGTWEKTHEHSGHDSSVNSVCWAPHDYGLIL
ACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVAPGSLIDQPSGQRPACPK
KFASGGCDNLIKLWREEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRV
FIWTCDDASGNTWSPRLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCI
SDVNKGQGSVTASATEGQQNEQ
NT seq 969 nt   +upstreamnt  +downstreamnt
atggtgtccgtcatcaacaccgtggacacctcgcacgaggacatgattcacgacgcacag
atggactactacggcacccgcctggccacctgctcctccgacaggtccgtcaagatcttc
gatgtgcgcaacggagggcagatcctcgtcgctgacctcagagggcacgagggtcctgtg
tggcaggtggcctgggcccaccccatgtatggcaacatcctggcatcttgctcctacgac
cggaaagtcatcatctggaaggaggagggcggcacctgggagaagacccacgagcactcg
ggccacgactcctcagtgaactcagtgtgctgggccccgcacgactacggcctcatcctg
gcttgcgggagctcggacggggccatctcgctgctgacctacaccggggaaggccagtgg
gaggtgaagaagatcaacaacgcccacaccatcggctgcaacgcggtcagctgggcgccc
gccgtcgccccgggaagcctcatcgaccagccctcggggcagaggcccgcctgccccaag
aagttcgcgtctggaggctgcgacaacctcatcaagctgtggagggaggaggaggacggc
cagtggaaggaggagcagaagctggaggcacacagcgactgggtccgcgacgtggcctgg
gccccctccatcggcctgcccaccagcaccatcgccagctgctcccaggacggccgtgtg
ttcatctggacttgtgacgatgcctccggcaacacctggtcccccagactgctgcacaag
ttcaacgacgtcgtgtggcacgtgagctggtccatcaccgccaacatcctggccgtctcc
gggggagacaataaggtgaccctgtggaaggagtcggtcgacgggcagtgggtgtgcatc
agcgacgtcaacaagggccaggggtccgtgacggcgtccgccacagagggccagcagaac
gagcagtga

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