Oryctolagus cuniculus (rabbit): 100350312
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Entry
100350312 CDS
T03373
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1 isoform X1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
ocu
Oryctolagus cuniculus (rabbit)
Pathway
ocu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100350312
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocu03019
]
100350312
Enzymes [BR:
ocu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
100350312
Messenger RNA biogenesis [BR:
ocu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
100350312
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
AAA_18
ATP_bind_1
TniB
MMR_HSR1
AAA_22
AAA_16
nSTAND3
CbiA
Motif
Other DBs
NCBI-GeneID:
100350312
NCBI-ProteinID:
XP_002709210
Ensembl:
ENSOCUG00000007045
LinkDB
All DBs
Position
1:204467002..204470591
Genome browser
AA seq
438 aa
AA seq
DB search
MEKSKARHSYSERMGEETNDDKKPTTKFELERETELRFEVEASQSVQLELLTGMAEIFGT
ELTRNKKFTFDAGAKVAVFTWHGCSLQLSGRTEVAYVSKDTPMLLYLNTHTALEQMRRQA
EKEEERGPRVMVVGPTDVGKSTVCRLLLNYAVRLGRRPTYVELDVGQGSVSIPGTMGALY
IERPADVEEGFSIQAPLVYHFGSTTPGTNIKLYNKITSRLADVFNQRCEVNRRASVSGCV
INTCGWVKGSGYQALVHAASAFEVDVVVVLDQERLYNELKRDLPHFVRTVLLPKSGGVVE
RSKDFRRECRDERIREYFYGFRGCFYPHAFNVKFSDVKIYKVGAPTIPDSCLPLGMSQED
NQLKLVPVTPGRDMVHHLLSVSTAEGTEENLSETSVAGFIVVTSVDLEHQVFTVLSPAPR
PLPKNFLLIMDIRFMDLK
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atggagaaaagtaaagcaaggcacagctactcagaaaggatgggagaggagaccaatgat
gacaagaagccgacgacgaaattcgaactcgagcgagaaacagagctccgctttgaggtg
gaagcgtctcagtcggttcagctggagctgttgaccggcatggcagagatctttggcacg
gagctgacccggaacaagaaattcaccttcgacgctggtgccaaggtggccgttttcact
tggcatgggtgttctctgcagctgagcggccgcacggaggtggcctacgtctccaaggac
acccccatgttgctttacctcaacactcacacagccctggagcagatgcggaggcaagcg
gagaaggaagaagagcgaggtccccgagtgatggtcgtgggccccaccgacgtgggcaag
tccacggtgtgccgcctgctgctcaactacgccgtgcgtttgggccgccgtcccacttac
gtggagctggatgtgggccagggatctgtgtccatccccggcactatgggggcgctctac
attgagcggccagcggatgtggaagagggtttctctatccaggcccctctggtctatcat
tttggctccaccacgcctggcaccaacatcaagctgtataataagattacatctcgacta
gcagatgtgttcaaccagaggtgtgaggtcaaccgaagagcatctgtgagtggctgcgtc
attaacacctgtggctgggtcaagggctctggttaccaggccctggtacatgcagcttca
gcatttgaggtggatgtagtcgtggtgctggatcaagaacgactgtacaatgaactgaaa
cgcgacctgccccactttgtacgcacagtactgctcccgaaatcagggggcgtggtggag
cgctccaaagatttcaggcgggaatgcagggatgagcgtatccgtgagtacttctatgga
ttccggggttgcttctatccccacgccttcaatgtgaagttttcagatgtgaaaatctac
aaagttggggcacccaccatcccagattcctgtctgcctttgggcatgtcccaggaggac
aatcagctcaagctagtgcccgtcacacctggccgagatatggtgcaccacctcctgagt
gtgagcactgcggagggcacagaggagaacctttccgagaccagcgtggccgggttcatt
gtggtgaccagtgtggacctggagcatcaggtgtttactgtcctttctccagctccccgc
ccactgcctaagaacttcctcctcatcatggatatccggttcatggatcttaagtag
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