KEGG   Oryctolagus cuniculus (rabbit): 100350642
Entry
100350642         CDS       T03373                                 
Name
(RefSeq) DNA repair endonuclease XPF
  KO
K10848  DNA excision repair protein ERCC-4 [EC:3.1.-.-]
Organism
ocu  Oryctolagus cuniculus (rabbit)
Pathway
ocu03420  Nucleotide excision repair
ocu03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:ocu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    100350642
   03460 Fanconi anemia pathway
    100350642
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ocu03032]
    100350642
   03400 DNA repair and recombination proteins [BR:ocu03400]
    100350642
DNA replication proteins [BR:ocu03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Other termination factors
    100350642
DNA repair and recombination proteins [BR:ocu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     100350642
SSDB
Motif
Pfam: ERCC4 HHH_5
Other DBs
NCBI-GeneID: 100350642
NCBI-ProteinID: XP_002711804
Ensembl: ENSOCUG00000014976
UniProt: G1T8H4
LinkDB
Position
6:7072906..7102963
AA seq 909 aa
MESGVPAQRTAMAPLLEYERQLVLELLDTDGLVVCARGLGADRLLYHFLRLHCHPACLVL
VLNTQPAEEEYFINQLKIEGVEHLPRRVTNEIASNSRYEVYTQGGVIFATSRILVVDFLT
DRIPSDLITGILVYRAHRIIESCQEAFILRLFRQKNKRGFIKAFTDNAVAFDTGFCHVER
VMRNLFVRKLYLWPRFHVAVHSFLEQHKPEVVEIHVSMTPAMLAIQTAILDILNACLKEL
KCHNPTLEVEDLSLENAIGKPFDKTIRHYLDPLWHQLGAKTKSLVQDLKILRTLLQYLSQ
YDCVTFLNLLESLRATEKAFGQNSGWLFLDSSTSMFVNARARVYHVPDSKMSKKGKMSEK
MEIKEEQETKKELVLECNPKWEALTEVLKEIEAENKESEVLGGPGQVLICASDDRTCSQL
QGYLTAGAEAFLLGLYRQAFDKDSRAEEVWARLRKADGSSRTRRSDKRPRARAARERALK
KKKPKLTLTQMVGKPEEPAEEGDVEEGSHGEVSSSPEGAAEGRHAEFEVQLSSDAAYGVL
QEPLTIIHPLLGCSDPYALTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRVYF
LIYGGSTEEQRYLTALRKEKEAFEKLIREKASMVVPEEREGRDETNLDLVRGTASANAPT
DTRKAGGQEQSGTQQSIVVDMREFRSELPSLLHRRGIDIEPVTLEVGDYILTPEVCVERK
SISDLIGSLNNGRLYSQCVAMSRCYKRPVLLIEFDPSKPFSLTPRGALFQEISSSDVSSK
LTLLTLHFPRLRLLWCPSPHATAELFEELKRNKPQPDVATAMAVTADSESLPESEKYNPG
PQDFLLKMPGVNAKNCRSVMNHVKNIAELATLSQDELARILGNAVNAKQLHDFLHTPYAE
VVSRGKVKK
NT seq 2730 nt   +upstreamnt  +downstreamnt
atggagtcgggagtgccggcgcaacgcactgccatggcgccgctgctggagtacgagcgg
cagctggtgctggaactgctggacaccgacgggctggtagtgtgtgcccgcgggctcggc
gcggaccggctcctctaccacttcctccggctgcactgccaccccgcctgcctggtcctg
gtgctcaacacgcagccggccgaggaggagtactttatcaatcagctgaagatagaaggc
gttgagcacctccctcgccgagtaaccaatgaaatcgcaagcaacagtcgctatgaggtt
tacacacaaggtggtgtcatatttgccacaagtcgaatactcgtggttgatttcttgact
gatagaataccttcagatttaattactggcatcctggtgtacagagctcacagaataatc
gaatcttgtcaagaagcgttcatcttgcgcctctttcgccagaaaaacaaacgaggtttt
attaaagctttcacagacaacgccgttgccttcgataccggtttctgccacgtagagaga
gtgatgagaaatctttttgtgaggaagctgtatctgtggccgaggttccatgtggcagta
cactcgtttttggaacagcacaaacctgaagttgtagaaattcatgtttctatgacacct
gccatgcttgccatccagactgctatcctggacattctaaatgcttgtctgaaggaactg
aagtgccataacccgacgcttgaagtggaggatttgtccttagaaaacgctatcggaaaa
ccttttgacaagacaattcgccattatctggatcccttgtggcaccagcttggagccaag
actaaatccttggttcaggatttgaagatattacgaactttgctgcagtatctctctcag
tatgactgtgtcacgtttcttaatcttctggaatctttgagagcaacggaaaaggccttt
ggtcagaattcaggctggctgtttcttgactccagtacctcaatgtttgtaaatgctcga
gcaagggtgtatcatgttcctgattccaaaatgagtaaaaaaggcaaaatgtctgaaaaa
atggagattaaagaagagcaagaaaccaagaaggagctggtcctggaatgcaacccgaag
tgggaggcgctgaccgaagtgctcaaggaaatcgaggcagaaaataaggagagcgaagtg
cttggtggcccaggtcaggtgctcatctgcgccagcgacgaccgcacctgctcgcagctg
cagggctacctgacggccggcgccgaggccttcctgctcgggctctacaggcaggccttt
gacaaggacagccgcgcggaggaggtgtgggcgaggctgaggaaggccgacggctcgagc
aggactcggaggtccgacaagaggcccagagcgcgcgctgccagagaaagggctctcaaa
aagaagaagccgaagttgaccctgacccagatggtgggcaaacccgaagaaccggcggag
gagggcgacgtcgaggaaggcagccacggcgaagtaagcagcagcccggagggcgcggcc
gaaggcaggcatgcggaattcgaggtccagttgtcctcggacgccgcctatggggtcctc
caagaacccctcaccatcatccacccgcttctgggctgcagcgacccgtacgcgctgacc
agagtcctgcacgaggtggagcccagatacgtggttctctacgacgccgagctcaccttc
gtccgccagctggagatctatagagcaagcaggcccgggaaacccctaagagtttacttc
ctgatatacggaggctcgacggaggagcagcgctacctcacggctctgcggaaagaaaag
gaagcctttgagaaactcataagggaaaaggccagcatggttgtccctgaagagcgagaa
ggcagagatgaaaccaatctggacttggtgagaggcacggcgtcggccaatgctcccaca
gacacgcggaaggccggtggccaggaacagagtggcacccagcagagcatcgttgtggac
atgcgtgagtttcgaagcgagctcccctcactgctgcatcgcaggggcattgacattgaa
ccggtgacgctggaggtcggagactacatcctgaccccagaggtgtgcgtggagcgcaag
agcatcagcgacctgatcggctccctgaacaacggccgcctctacagccagtgcgtcgcc
atgtcccgctgctacaagcggcccgtgctgctcatcgagtttgaccccagcaagcccttc
tccctgaccccccgcggcgccttgtttcaggagatctccagcagcgacgtcagctccaag
ctcaccctgctcacgctgcactttcccaggctgcggctgctctggtgcccctcgccgcac
gccaccgccgagctgttcgaggagctgaaacgaaataagccgcagccggacgtggccacg
gccatggccgtcacggcggattcggaaagcctccccgagtccgagaagtacaaccctggc
ccccaggacttcctgctaaagatgccaggggtcaacgccaagaactgccgctcggtgatg
aaccacgtgaagaacattgcagagctggccacgctgtctcaggacgagctcgcgcgcatc
ctgggcaacgccgtgaacgccaagcagctccacgacttcctccacaccccgtacgcggaa
gtggtgtcccggggaaaagtgaagaaatga

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