Oryctolagus cuniculus (rabbit): 100351511
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Entry
100351511 CDS
T03373
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
ocu
Oryctolagus cuniculus (rabbit)
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ocu03021
]
100351511
03041 Spliceosome [BR:
ocu03041
]
100351511
Transcription machinery [BR:
ocu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100351511
Spliceosome [BR:
ocu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
100351511
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
DUF3525
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
100351511
NCBI-ProteinID:
XP_051711196
Ensembl:
ENSOCUG00000026063
LinkDB
All DBs
Position
12:complement(10732004..10978330)
Genome browser
AA seq
1293 aa
AA seq
DB search
MEAVKTFNSEDCASTPACTDCFSSSMDTRSILYSLNDYKPPISKAKMTQITKAAIKAIKF
YKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNL
YRCPGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMAAGIPPPVVTPVLASTTAAMSNTPG
TPVTPVTPANVVQGLPDPWVSQITNTDTLAAVAQILQSPQGQQLQQLIQTLQIQQQKPQP
SILQALDAGLVVQLQALTAQLTAAAAAANTLTPLEQGVSFNKKLMDRFDFGEDSEHSEEP
KKEIPTPQLSHVSESVNNSIFHQIAEQLQQQNLEHLRQQLLEQQQPQKATPQDSQEGTFG
SEHSASPSQGSSQQHFLEPEANLDDSIDIQQQDMDIDEGQDGVEEEIFEQEAKKVAVRSR
SRTHSRSRSRSPRKRRSRSRSGSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKER
QKKGLPPIRSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCM
VHRQDAFRALQKLSSGSYKIGSKVIKIAWALNKGVKTEYKQFWDVDLGVTYIPWEKVKVD
DLDGFAEGGMIDQETVNSEWETVKSSEPVKETVPTTQSPPPVEKETVVTTQAEVFPPPVA
MLQIPVAPAVPTVSLVPPAFPVSMPVPPPGFSPIPPPPFLRASFNPSQPPPGFMPPPVPP
PVVPPPAIPPVVPTSLVQPPLSMTPETVKDVGFGSLVLPGGSVASSLATSTLPAGNVFNP
PAKQAEPEEKVPHLIDHQISSAENTRPVIPNDISSNAAILGGQPPSVTSNSGILGVQRPN
VSSNSEILGVRPSNVSSSSGIIGAQPPNILNNSGILGIQPPSVSSNSGLLGVLPPNMPNN
SGLVGVQPPNVPNTSGLLGTQPPAGPQNLPPLNIPSQRMPAMPMLDIRPGLIPQAPGPRF
PLIQPGLPPQRGIPPPSVLDSALHPPPRGPFPPGDIFSQPERPFLAPGRPSVDNVTNPDK
RIPLGNDNIQQEGDRDYRFPPIETRESLSRPPPVDVRDVVGRPIDPREGPGRPPLDGRDH
FGRPPVDIRENIVRPGIDHLGRRDHFGFNPEKPWGHRGDFDEREHRVLPVFGGPKGLHEE
RGRFRAGSYRFDPRSGPWNRGFGQEVHRDFDDRRRPWERQRDRDDRDFDFCREMNGNRLG
RDRIQNTWVPPPHARVFDYFEGATSQRKGDNVPQINGENTERHAQPPPLPVQSDPELFEK
LASSSEINKEKSDTVADIESEPVVVESTETEGT
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtgaaaaccttcaatagcgaggattgtgcctctactcctgcttgtacagac
tgcttttccagcagcatggacacaagaagcatattgtattccctgaatgactataaacca
cccatttctaaagcaaaaatgacccaaattacaaaggcagccatcaaagctattaagttc
tataaacatgtggtacagagtgttgagaaattcattcaaaaatgtaagccagaatacaag
gtacctggactttatgttattgattccattgtgcgacaatctcggcatcagtttgggcaa
gaaaaggatgtgtttgcacccagatttagtaataacatcattagcacttttcagaattta
taccgttgtcctggtgatgacaagagtaaaatagtgagagtattaaacttgtggcagaag
aacaatgtatttaagagtgagattattcagccccttctggatatggcagcagggattcct
cccccagttgtcactccagtgctggccagcactactgctgctatgagcaatactccagga
actcctgtgacacctgtgactccagccaatgtagtccaaggcttacctgacccgtgggta
tctcagataacaaatacagatacacttgcagctgtggctcagatcttacaaagtcctcaa
ggccaacagcttcagcagttaatacagaccttacagatacaacagcagaagcctcagcct
tccattctgcaggcgctggatgctggtcttgttgtgcagctgcaggctcttacagcacag
cttactgctgcagcagccgcagccaacacgcttactcccctagaacagggcgtctctttt
aacaagaagttgatggataggtttgattttggagaagattccgagcatagtgaagaaccc
aaaaaggaaattccaactcctcagctttcccatgtttccgaatctgtgaacaattccatc
tttcatcagatagcagagcagcttcagcagcaaaaccttgaacatcttagacagcagctc
ctggagcaacagcagcctcaaaaggcaactcctcaggatagtcaagaagggacatttggg
tcagagcattcagcatctccatcacaagggagcagtcaacagcactttcttgaacctgaa
gcaaatttggatgattccatagatattcagcaacaggatatggatatagatgaagggcag
gatggagtggaagaagagatttttgaacaagaagctaagaaagtggctgttcgctcaaga
tcaagaactcactcacgatctcgttcaagatcaccgagaaaacgaaggtccaggtcacga
tctggttctcgtaagcgtaaacacagaaagcgctcacgttcacgatcaagagaaagaaag
aggaaatcatcacgctcatactccagtgaaaggcgagccagagagagagaaaaagaacgg
cagaaaaagggattacctccaattagatctaaaacattaagtgtatgtagtactactctc
tgggttggccaggtggacaagaaagcaacacagcaagatttaaccaatctatttgaagaa
tttggacagattgaatccattaatatgattcctcccaggggatgtgcttatgtctgcatg
gttcatcgacaagatgcatttagagctcttcagaagcttagttcggggtcatataaaatt
ggatccaaggtcattaagattgcctgggctttaaacaaaggtgtaaaaacagaatacaag
caattctgggatgtggatctaggagttacgtatataccgtgggaaaaagttaaagtggac
gacttggatggctttgcagaaggaggcatgattgatcaggagactgtaaatagtgagtgg
gaaactgtgaaaagctcagaacctgtcaaagagacggtcccgacaacacagagtccacct
ccggttgaaaaggagacagtagtgacgacccaggcagaggttttcccaccacctgttgct
atgttgcagatcccagtagcaccagctgtgcctacagttagtttagtcccaccagcgttt
cctgtgtcaatgccagttcctccccctgggttcagtccaatacctccacctccttttctg
cgagcaagttttaacccttcacaaccacctcctggtttcatgccaccgccagttccccca
cccgtagtaccaccccctgcaattccaccggtagtaccaacatctttagtgcaaccacca
ttatctatgaccccagaaactgtgaaagatgttggatttggtagccttgttttgccaggt
ggttctgttgccagtagccttgctacttccactctgccagctggaaatgtttttaatcct
ccagctaagcaagcagaacctgaagaaaaagtacctcatcttatagaccaccagatttct
tctgctgaaaacaccagaccagtgattccaaatgatatttcaagtaatgctgcaatttta
ggaggacagccacccagtgtcacaagcaattctggaattctgggagtccagagaccaaat
gtatccagtaattctgaaattcttggagtccggccatctaatgtttccagtagttctggg
attattggagcccaaccaccaaatattctaaataactccggaattttgggaattcagcct
ccaagtgtgtcgagcaattctggacttttgggagtgctacccccaaatatgcctaacaat
tctggacttgtaggagtacagccaccaaatgttcctaatacgtctggacttttgggaacg
cagccaccagctggacctcaaaacttaccccctttaaatatccccagtcaaaggatgcct
gcaatgccaatgttagatattcgtccaggactaattccacaggcacctggaccacgattc
cctttaatacagcctggacttccaccccagcggggaatccctcccccctcggtacttgat
tcagctcttcacccaccaccccgtggaccctttcctccaggagatatttttagtcagcca
gaaagacctttcctagctcctggaagaccaagtgtagacaatgtcactaacccagacaaa
aggataccacttgggaatgataacattcaacaggaaggagatagagattaccgctttcct
ccgatagaaacccgagaaagccttagcaggcctcccccagtggatgttagggatgtggtc
ggccgccctatagatccaagggaaggtcctgggaggcctccattagatggaagggatcat
tttggaagacctcctgtagatatcagagagaatattgtgaggccaggaatagatcatctt
ggtagaagagaccactttggctttaatccagagaagccttgggggcacagaggagatttt
gatgagcgagagcatcgagtcctgcctgtgtttggtggtccaaaaggcttacatgaagaa
agaggtagatttcgggctggaagctatcgctttgatccgagaagtggtccttggaacaga
ggatttggacaagaagttcacagagattttgatgaccgcagaagaccctgggagaggcaa
agggatagggatgacagagattttgatttttgcagagaaatgaatggaaatcgtcttgga
cgagatagaattcaaaacacttgggtcccccctcctcatgctcgggtttttgattatttt
gaaggggccacttctcaacgaaaaggtgataatgtgcctcagattaatggtgaaaataca
gagagacatgctcaaccaccgcctttaccagtgcagagtgatcctgaactttttgaaaaa
ctggcatcttcaagtgagataaacaaggagaagagtgacacagttgctgatatagaaagt
gaaccagtggtggtagaaagcacagaaactgaggggacataa
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