Oryctolagus cuniculus (rabbit): 100351819
Help
Entry
100351819 CDS
T03373
Name
(RefSeq) PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X6
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
ocu
Oryctolagus cuniculus (rabbit)
Pathway
ocu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100351819
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocu03019
]
100351819
Enzymes [BR:
ocu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
100351819
Messenger RNA biogenesis [BR:
ocu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100351819
mRNA degradation factors
3'-5' decay
Pan complex
100351819
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAN2_N
UCH_1
RNase_T
UCH
WD40_CDC20-Fz
WD40_like
Beta-prop_THOC3
Motif
Other DBs
NCBI-GeneID:
100351819
NCBI-ProteinID:
XP_002711124
Ensembl:
ENSOCUG00000007227
LinkDB
All DBs
Position
4:complement(47460730..47475777)
Genome browser
AA seq
1201 aa
AA seq
DB search
MNFEGLDPGLAEYAPAMHSTLDPVLDAHLNPSLLQNVELDPEGVALEALPVQESVHIMEG
VYSELHSVVAEVGVPVSVSHFDLHEEMLWVGSHGGHATSFFGPALERYSSFQVNGNDDIR
QIQSLENGILFLTKNNLKYMARGGLIIFDYLLDESEDMHSLLLTDSSTLLVGGLQSHILE
IDLNTVQETQKYAVETPGVTVMRQTNRFFFCGHTSGKISLRDLRTFKVEHEFDAFSGSLS
DFDVHGNLLAACGFSSRLTGLACDRFLKVYDLRMMRAITPLQVHVDPAFLRFIPTYTSRL
AIISQSGQCQFCEPTGLANPADIFHVNPVGPLLMTFDVSASKQALAFGDSEGCVHLWTDS
PEPSFNPYSRETEFALPCLVDSLPPLDWSQDLLPLSLIPVPLTTDTLLSDWPAANSAPAP
RRAPPVDAEILRTMKKVGFIGYAPNPRTRLRNQIPYRLKESDSEFDTFSQVPESPIGREE
EPHLHMVSKKYRKVTIKYSKLGLEDFDFKHYNKTLFAGLEPHIPNAYCNCMIQVLYFLEP
VRCLIQNHLCQKEFCLACELGFLFHMLDLSRGDPCQGSNFLRAFRTIPEASALGLILADS
DEASGKGNLARLIQRWNRFILTQLHQDMQELEVPQAYRSAGGSYGISFCSSGDSVIGQLF
SCEMENCSLCRCGSETVRASSTLLFTLSYPEDKTGKNYDFAQVLKRSICLEQNTQAWCDN
CEKYQPTIQTRNIRHLPDILVINCEVNSSKEADFWRAQAEVAFKMAMKKHGGEVVKNKEF
ARADRKEVGSPEGALLCPSMEELKNVWLPFSLRMKMTKNKGLDVCNWTDGEEVQWGPARA
EEEHGVYVYDLMATVVHILDSRTGGSLVAHIKVGETYHQRKEGVTHQQWYLFNDFLIEPI
DKHEAVQFDMNWKVPAILYYVKRNLNSRYNLNIKNPIEASVLLAEASLARKQRKTHTTFI
PLMLNEMPQVGDLVGLDAEFVTLNEEEAELRSDGTKSTIKPSQMSVARITCVRGQGPNEG
IPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDIGVKFVG
HGLQKDFRVINLMVPKDQVLDTVYLFHMPRKRMISLRFLAWYFLDLKIQGETHDSIEDAR
TALQLYRKYLELSKNGTEPESFHKVLKGLYEKGRKMDWKVPEPEGQTSPKNAAVFSSVLA
L
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
atgaactttgagggtctggaccctggattggcagagtatgctccggctatgcattccacc
ctggaccctgtcctggatgcccacctgaacccgagtctgctacagaatgtggagctggac
ccggagggagtagccctggaggctcttcccgtccaggagtcggtgcacataatggaaggc
gtctactctgagctgcacagcgtggtggctgaagtgggcgtgcctgtctccgtctctcac
tttgacttgcacgaggagatgctgtgggtggggagccacgggggccatgccacttcattt
tttggcccagccttggagcgctactcatcctttcaagtcaatggcaatgatgacattcga
cagatccagagcctagagaatggtattctttttctcaccaagaacaacctcaagtatatg
gcccgtgggggcctcattatatttgattacctgctggatgagagtgaggatatgcacagc
ctcctgctgaccgacagcagcactctccttgttggtgggctgcagagccacatattggag
atcgatcttaacactgtccaggagactcagaagtatgcagtcgaaacacctggagtcacc
gtcatgagacagacaaatcgcttcttcttctgtggccacacatccggcaagatttccctg
cgagacctccgcacttttaaggtggagcatgagttcgacgctttctcagggagtctgtca
gactttgacgtgcacggcaacctcctggctgcctgcggcttctccagccgcctcactggc
ctggcctgcgaccgtttcctcaaggtgtacgacctgcgcatgatgcgtgcgattacaccg
cttcaggtccacgtggatcccgccttcttacgcttcatccccacatatacgtctcggctc
gccatcatctctcagtcgggacagtgccagttttgtgaacccaccggcctggccaaccca
gcagatatctttcatgtgaatcctgtgggtcctctgctaatgacatttgatgtgtcagcc
agcaagcaggccctggcctttggggattctgagggctgcgtgcacctctggactgactcc
cctgagccttctttcaacccctactcccgtgagactgagtttgctttgccctgtctcgtg
gactcactacctcctctggactggagccaggacctgctgcctctttccctcatccctgtg
ccactcaccactgacacacttctctctgactggcctgctgccaactccgctccagccccc
aggcgagcacctcccgtggatgcagagattctgcgcaccatgaagaaagtaggcttcatt
ggctatgcccccaacccccgcaccaggctacgtaatcagattccttaccgactcaaggag
tcggacagtgaatttgacaccttcagccaggtccccgagtcaccgatagggcgggaagag
gagccacatctgcacatggtctctaagaaataccgcaaggtgaccatcaaatattccaag
ctggggctggaagactttgacttcaagcattacaacaagaccctgtttgctggactagag
ccgcacatccccaatgcctactgtaactgcatgatccaggtgctctacttcctggagcct
gttcgctgtctcatccagaaccacctttgccagaaggagttctgcctggcctgtgagctg
ggattcctcttccacatgctggacctctctcgtggcgacccttgccagggcagtaatttt
cttcgagcattccgcaccattcccgaggcctcagcccttggtctgatcctggctgactcg
gatgaggcttccggcaagggcaacctggccaggctcattcagaggtggaatcgcttcatt
ctcacccagctgcatcaagatatgcaggagctggaagtgccccaagcttaccgcagtgct
ggaggcagctatgggatcagcttttgctcatcgggggactctgtcattgggcagttgttc
agctgcgagatggagaactgcagcctctgccgctgtggcagcgagaccgtgcgagcctcc
tccactctgctcttcacgctctcctaccctgaggataaaaccgggaagaactatgacttt
gctcaggtgctgaagcgaagcatctgcctggagcagaacacacaggcctggtgcgacaac
tgtgaaaagtaccagcccacgattcagacccgcaacatccgtcatctgccagacattctt
gtcatcaattgtgaggttaacagctccaaagaggccgatttctggagagcgcaggctgag
gttgccttcaagatggcaatgaagaagcacggtggggaagtcgtcaagaacaaggagttt
gctcgggctgaccggaaggaagtggggagtcccgaaggtgcgctgctctgtccctccatg
gaggagctgaagaatgtctggcttcctttctcccttcgcatgaagatgaccaagaacaaa
gggctggatgtttgcaattggactgatggggaggaggtgcagtggggcccagccagggca
gaggaggagcatggtgtctatgtgtatgacctgatggcaactgtggtacacatcctggac
tcacgcacagggggcagcctggtggctcatatcaaagttggagagacgtaccaccagcgc
aaagagggtgttactcaccagcagtggtatctcttcaatgactttctcatcgaacccatc
gataagcatgaagccgtgcagtttgacatgaattggaaagtacctgcaatcctttattac
gtgaaaagaaatctcaattccagatataacctgaacatcaagaatcctattgaggctagt
gtcctgctggctgaagcctcactggcacggaagcagcggaagacacatactacctttatc
ccactgatgctgaatgaaatgccacaggttggggatctggtgggcctcgatgctgagttt
gtcaccctcaatgaggaagaagcagagttacgcagtgatggcaccaagtccaccattaaa
ccaagccagatgtcagtagcaaggatcacctgtgttcggggccagggaccaaatgagggt
atccccttcattgatgactacatctctacccaggagcaggtcgtggattacttgactcag
tactcggggataaagccgggagaccttgacgccaagatatcctccaagcacctcacaacc
ctcaagtccacgtacttgaagcttcggtttctcattgacattggcgtcaagttcgtgggc
catggcctgcagaaggacttcagggtcatcaacctcatggtgcccaaggaccaagtactt
gacactgtgtacctgttccacatgccccgaaaacgaatgatttccctgcgattccttgca
tggtactttctggacctgaagattcaaggggagacccatgacagtattgaggatgcccgc
acagctcttcagctctatcgaaagtatctggagctaagcaagaacggcactgagcctgaa
tccttccacaaggtgctcaagggcctttatgagaagggccggaagatggactggaaggtg
cctgagccagagggccagacaagtcccaagaacgcagcggtcttctcctcagtgctggca
ctctga
DBGET
integrated database retrieval system
