Oryctolagus cuniculus (rabbit): 100351968
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Entry
100351968 CDS
T03373
Symbol
SHOC1
Name
(RefSeq) protein shortage in chiasmata 1 ortholog isoform X1
KO
K28108
shortage in chiasmata 1
Organism
ocu
Oryctolagus cuniculus (rabbit)
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ocu03036
]
100351968 (SHOC1)
Chromosome and associated proteins [BR:
ocu03036
]
Eukaryotic type
Meiosis-specific proteins
Others
100351968 (SHOC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5587
MYO6_lever
Motif
Other DBs
NCBI-GeneID:
100351968
NCBI-ProteinID:
XP_017201309
Ensembl:
ENSOCUG00000016284
LinkDB
All DBs
Position
1:15680364..15782516
Genome browser
AA seq
1501 aa
AA seq
DB search
MLFPALKYCAIDYLYENEARKKYYRDTLMIRIPSCLCQDGNYLAEVIDSTYRTPWTRISA
VPVWGNTDISVLDQWKASFHVEDFLEKKTPARMVTRVNCNCEEIVPSSNPNSQPEVEEGS
FYTFQDYSEVFTPIKCSEKYSSSQAQSQDLYIDEEMIFVNSLMDYKNQLPTLQTLLSRLK
LFKLKDPLIDFKKQTFNEDIVFRECLSSQGSWDVFLKDLYMDKENFCKVELGDADLNEPL
FFYFEFESLLSTILKQETSVPSLSDLKELLNLTPEVINYVDENEKLFKRDLTSKHGIEIE
DRKWSFTEILTSQSLCEPECHEPEELEMLLSQPHGTSQHSSVNSLCAGLQTYPLSPDCKS
NLLTAEESAKKYAMVQQSESCRSSSDTLLLTAPSIQECIGQYSVTDLPSMVSIEEESLVI
DPVKAECQKKASLSPKMIGSLENTNTSLDHCLSLNDTKMTMFLPENMLQLESHLEDKSCP
SPIILINEKSTNDHLSLPRMSLPLAEEVTDMCFSDDGISTKPAAAEEKSQNDQELVDGIT
QKNENKDHFEFEYTEPSIESPSTSRIKKTSFKNCKKQDNYLDPLSDFIMLRNKYTTCISR
TKVTDNDEKNAFQDEEECSLTLQEESPIVCGNKTLEKIIPKRGVNNVIEIQASDSQCKAY
CLLEAAAAPVLKKLACLCPFPAANWKFATVIFDQTRFFLKEQEKVISDAVHQGTNDEREM
TFKYAAVLHLLVTIRDVLLTCDLDTTLGYLSNAKDVYKSILGSYLDDIWRQLDIVQFIKE
KKPEINYRIQELQCQIVNWMQDQEQIKVLIIIRMDSDDEKHLLIKMLSKIEGLTFTELNS
NQGRDFLESNILLNGTSSCVIVHNQYIGADVPWNNFSFVVEYNYVENSCWTTHCEKLNIP
YLALKMVLPDTVLKRNTLLDGFGDFLLEIQIPYVFFASDGLLNIPEILQLLESNYNITLV
ERCYSESLKLFGSTEHYVVVTVDEHTAVILQNLEELNCEKASDNIIMRLMALSFQYSYCW
LILYKKETLNSEYHLTEKTLHHLALIYAALVSSGLKSEELDVKLVIAPGVEEAALIIRQI
ADHNLMISKKEPHDWLDKSWLEVSPSKEEMYLLDFPCINPLVAQLMLNKGPSLHWILLAN
LCQLQEVLPEVPEKVLKHFCSITSLFKINSSSITKSPQISSPQEYKNQSSASDFSDPITE
RYNEYYQYSDLGERARENTNTTYNTFHEELREMLPTLSSASSYNQTNYWKDFSCSPNVVQ
NNPCPINLESRKAACNSFLNQNDSGSDVFSLGLTQINYESTIPPIDTQRRATPSFINYQE
KQIHEAKGSKNKEVFAPIFSLMGSQSPHLNRKKNVWEPQTHSFNLQCGMEQTTCNEWYSQ
KGNLFADQQQYLPDQLEGFPWESSNAATEKTFRGDIPSVPSLDFSPASNVNQKESNRSLY
FYQGTGKCLSQKRHLESSSNSGDKESLTGFMYSQLPQFKKRRLTYEKVPGRADGQTRLRF
F
NT seq
4506 nt
NT seq
+upstream
nt +downstream
nt
atgttgtttccagcactcaaatattgtgcaatagactatttatatgagaatgaagctaga
aagaagtattacagagatactttaatgattcgaatcccttcatgtttatgtcaagatgga
aattatcttgcagaagttattgatagtacatataggacgccatggacaagaatctcagct
gttccagtttggggaaatacagatatttcagtcttggaccaatggaaagcaagtttccat
gtggaggatttccttgagaagaaaacacctgcaagaatggttacccgggttaattgcaac
tgtgaagaaattgttccaagttcaaatccaaactcacaacctgaagtagaagaaggcagc
ttttacaccttccaggactacagtgaagtctttacacctatcaagtgttcagagaaatat
tcatcttctcaggcacagagccaagatttatatattgatgaagaaatgatttttgtaaat
agtttgatggattataaaaatcagctaccaactttgcaaactctcttgagtagactaaaa
ttatttaagttaaaggaccctcttatagatttcaaaaaacagaccttcaatgaagatatt
gttttcagggaatgtttatcatctcaaggaagttgggacgtttttctgaaagatctttat
atggataaagagaacttttgtaaggtggaactaggagatgcagatttaaatgagccatta
tttttttattttgagtttgaatccttactatctacaattcttaaacaagaaactagtgtt
ccatcactgtcagacctgaaggagttattaaacttaacgccagaagtaataaattacgta
gatgaaaatgaaaagcttttcaaaagagatcttacttccaagcatggaattgaaattgag
gatagaaaatggagcttcacagagattttaacatctcaaagcctgtgtgagccagagtgc
catgaaccagaagagttagaaatgctgctaagtcagccacatggcacaagtcaacattct
tcagtgaattcattatgtgcaggacttcagacatatccgttgtctcctgattgtaaaagt
aatttacttactgctgaggaatcagctaagaaatatgctatggtgcagcaatcagaaagc
tgcagaagctcttcggacacactgttgcttacagcaccaagtattcaagagtgcatcggt
caatattcagttacagatcttccaagtatggtgtctattgaggaagaaagtcttgtgatt
gatcctgtaaaggcggagtgccagaaaaaagcaagtctaagtccaaagatgataggaagt
ttggaaaacacaaacacatctttggatcattgtctatctctaaatgatactaaaatgaca
atgtttttgcctgaaaacatgcttcaattagaatcacatttagaggataaaagttgtcct
tcacctattatacttattaatgagaaatctacaaatgatcatttatcacttccacgaatg
agtctacctctggcagaagaagtaacagatatgtgtttttctgatgatggtatctctact
aaaccagcagcagcagaagaaaaatcacagaatgatcaagaactagtagatggaataacc
caaaagaatgaaaataaagatcattttgagtttgagtacacagaaccttctattgaatca
ccttccacttcaagaattaaaaaaacatctttcaagaattgcaaaaaacaggataactat
ttggaccctctgagtgactttattatgctgcgaaataaatatacaacttgtatatcaagg
accaaagtcacagacaatgatgaaaaaaatgcatttcaagatgaagaagaatgttcattg
actcttcaagaagaaagtcctattgtttgtggtaataaaaccctagagaaaataattcca
aaaaggggagtaaataatgtcattgaaattcaagcatcagatagccaatgcaaagcatac
tgtcttctagaagcagcagctgctcctgtcttaaaaaaacttgcatgcctctgtcctttc
cctgctgctaattggaaatttgctactgttatttttgatcaaacaaggttcttcttaaag
gaacaagaaaaagtaataagtgatgctgttcaccaaggtacaaatgatgaaagagaaatg
acgttcaagtatgccgctgtcttacaccttctggtaacaattagagatgtcctcttaaca
tgtgacttggacacaacattgggatatttatcaaatgcaaaagatgtctacaaaagtatt
ttaggctcctatttggatgacatttggagacagctggatattgtacagtttattaaggaa
aaaaagcctgaaatcaactaccgaatacaagaattgcaatgtcagatagtaaattggatg
caagaccaagagcaaattaaggtgctgattataataagaatggattcagatgatgaaaag
catttgctcattaaaatgctttccaaaatagaaggtttaacatttactgaacttaattcg
aatcaaggaagagattttctggaatctaacattctattaaatggtacaagttcctgtgta
attgtacataatcaatatattggagcagacgttccctggaataatttctcatttgtggtg
gaatacaattatgtagaaaactcttgttggactacacactgtgaaaagttgaatattcct
tacctggccttaaaaatggttcttccggacacagttttgaagagaaacactttactggat
ggatttggtgatttccttctggaaattcagattccatatgtgttttttgcatctgatgga
cttcttaatattccagaaatacttcaactgctagaatccaattacaatatcacactggtg
gaaagatgctacagtgagtcattaaaactctttggaagcacagagcattatgtagtggtg
acagttgatgaacacactgctgtcattttgcagaacctagaagaattgaattgtgagaag
gcatcagacaatatcattatgagactcatggcattatcattccagtacagctattgttgg
ctaattttatacaaaaaagaaacactaaattcagagtaccatcttacagagaaaacactt
catcatctagcactgatttatgcagcattggtttcatctgggctaaaatctgaagaactg
gatgtaaagcttgtaattgccccaggagtagaagaggctgcattgataattcgacaaatt
gctgaccacaatttaatgatctcgaagaaagaacctcatgattggttggataaatcttgg
cttgaagtttcaccatctaaggaagaaatgtatttacttgacttcccatgtattaatcca
ctggtggctcagctcatgttaaataaaggaccttctctgcattggatattattagcaaac
ctgtgtcaacttcaggaagtcctacctgaagttccagaaaaagtgttaaagcatttttgc
agcattacttctttattcaagattaattcttcttccataacaaaatcacctcagatttca
tcacctcaggaatacaagaatcagagttcagcttccgacttttcagaccctatcactgaa
cgatataatgaatattaccaatattcagatttaggagagagagcacgagaaaacacaaac
accacttataacacttttcacgaggaactaagagaaatgcttcccactttatcatctgca
agttcttataaccagaccaactactggaaagacttcagttgtagccctaacgtagtacag
aataatccttgtccaattaatctggaatcaaggaaagcagcttgtaactcatttctaaac
cagaatgactcaggctcagatgtcttttcgttgggtctaacacaaataaattatgaatcc
acaataccaccaattgacactcagaggagagctacccctagttttataaattatcaggaa
aagcagatacatgaagcaaaaggctccaaaaacaaggaagtatttgcccccatcttttca
ctaatgggctctcaatctcctcatttgaaccgtaagaaaaatgtgtgggaaccacagact
cattcattcaacttacaatgtggcatggagcagactacgtgtaacgaatggtactctcag
aaaggtaatctattcgctgaccagcagcagtatctaccagaccagttagaaggcttccct
tgggaaagttcaaatgctgcgactgagaagactttcaggggagacataccatctgttccc
agtttagatttttctcctgcttctaatgtaaatcagaaagaatccaaccgtagcctttat
ttctaccaaggaactgggaaatgtttaagtcagaaaaggcaccttgaatcttcatctaac
tcaggagacaaggaatcattaacaggtttcatgtactcgcaactaccacaattcaagaaa
cgacgtctcacttatgaaaaagtccctggtagagctgatggacaaacccggctgaggttt
ttttga
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integrated database retrieval system
