KEGG   Oryctolagus cuniculus (rabbit): 100352258
Entry
100352258         CDS       T03373                                 
Name
(RefSeq) DNA excision repair protein ERCC-8 isoform X1
  KO
K10570  DNA excision repair protein ERCC-8
Organism
ocu  Oryctolagus cuniculus (rabbit)
Pathway
ocu03420  Nucleotide excision repair
ocu04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:ocu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    100352258
  09124 Replication and repair
   03420 Nucleotide excision repair
    100352258
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ocu04121]
    100352258
   03400 DNA repair and recombination proteins [BR:ocu03400]
    100352258
Ubiquitin system [BR:ocu04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     100352258
DNA repair and recombination proteins [BR:ocu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      100352258
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_WDR75_1st EIF3I WD40_MABP1-WDR62_2nd Beta-prop_RIG_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 WDR55 Beta-prop_WDR90_POC16_2nd WD_LRWD1 Beta-prop_EML ANAPC4_WD40 Beta-prop_TEP1_C WD40_RFWD3 WD40_MABP1-WDR62_1st WDR90_beta-prop_4th Beta-prop_IFT122_1st Beta-prop_WDR19_1st NBCH_WD40 Beta-prop_IFT140_1st Beta-prop_RIG_1st Beta-prop_Nup120_160 Beta-prop_WDR11_1st Beta-prop_NUP159_NUP214 Beta-prop_HPS5
Other DBs
NCBI-GeneID: 100352258
NCBI-ProteinID: XP_002714099
Ensembl: ENSOCUG00000004519
UniProt: G1SLZ1
LinkDB
Position
11:12588399..12666493
AA seq 396 aa
MLGFLSARQVGLEDPVRLRRAESTRRVLGLELNKDRDVERIHGSGVNTLDIEPVEGRYML
SGGSDGVIVLYDLENSSRQPFYTCKAVCSIGRNHPDVHKYSVETVQWYPHDTGMFTSSSF
DKTLKVWDTNTLQTADVFNFEETVYSHHMSPVATRHCLVAVGTRGPKVQLCDLKSGSCSH
ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGEKSQAVESA
NTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNDSRKGLKFAVS
CGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKNVDCCVFQSNFQELYSGSRDCNILA
WVPSLSEPVPDDDEAATKTQLNPAFEDAWSSSDEEG
NT seq 1191 nt   +upstreamnt  +downstreamnt
atgctggggtttttgtccgcgcgacaggtgggtttagaggaccctgttcgcctccggaga
gcagagtctacacggagggttttgggactggagttaaacaaagacagagatgttgaaaga
atccatggcagtggagttaacacccttgacattgaacctgttgaaggacgatacatgtta
tcaggtggatcagatggtgtgattgtgctttatgaccttgagaactccagcagacagcct
ttttacacctgtaaggcggtgtgttccattggcagaaaccatcctgatgttcacaaatac
agtgtggagacggtacagtggtatcctcacgatactggcatgttcacatcaagttcgttt
gacaaaactctgaaagtatgggatacaaatacattacaaactgcagatgtatttaatttt
gaggaaacagtttatagccatcacatgtctccagtcgccaccaggcattgcttggtagca
gttggtactagagggccgaaagtacaactttgtgacttaaagtcgggatcctgttctcac
attctacagggtcacagacaggaaatactggcagtttcctggtcaccacgctatgattat
atcttagcaactgcaagtgctgacagcagagtaaagttatgggatgtgaggagagcatcg
ggatgtctgattactcttgatcagcataatggggaaaagtcacaagctgttgaatcagca
aacactgctcataatgggaaagttaatggcttatgttttacaagtgatggacttcacctc
ctcactgttggtacagataatcgaatgaggctctggaatagttccaacggagaaaacaca
ctagtgaactatggaaaagtttgtaatgacagtagaaaaggattgaaattcgctgtctcc
tgcggctgcagttcagaatttgtttttgtaccatatggtagcaccattgctgtttataca
gtttactcaggagaacagataactatgcttaagggacattataaaaatgttgactgctgt
gtatttcaatctaatttccaggaactttatagtggtagcagagactgcaatattcttgct
tgggtgccatctttaagtgaaccagttccagatgatgatgaggctgcaaccaaaacacaa
ctgaatccagcgtttgaagatgcttggagcagcagtgatgaggaaggatag

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