Oryctolagus cuniculus (rabbit): 100353025
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Entry
100353025 CDS
T03373
Symbol
VARS1
Name
(RefSeq) valine--tRNA ligase
KO
K01873
valyl-tRNA synthetase [EC:
6.1.1.9
]
Organism
ocu
Oryctolagus cuniculus (rabbit)
Pathway
ocu00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
100353025 (VARS1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
ocu01007
]
100353025 (VARS1)
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ocu03016
]
100353025 (VARS1)
Enzymes [BR:
ocu01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.9 valine---tRNA ligase
100353025 (VARS1)
Amino acid related enzymes [BR:
ocu01007
]
Aminoacyl-tRNA synthetase
Class I (U)
100353025 (VARS1)
Transfer RNA biogenesis [BR:
ocu03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
100353025 (VARS1)
Prokaryotic type
100353025 (VARS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_1
Anticodon_1
GST_C
tRNA-synt_1g
tRNA-synt_1_2
Val_tRNA-synt_C
GST_C_2
tRNA-synt_1e
Arc1p_N_like
Jag_N
CPT_N
Motif
Other DBs
NCBI-GeneID:
100353025
NCBI-ProteinID:
XP_051710894
Ensembl:
ENSOCUG00000022463
LinkDB
All DBs
Position
12:135142752..135155614
Genome browser
AA seq
1264 aa
AA seq
DB search
MSILYVSPHPDAFPSLRALIAARYGEAGEGPGWGGAHPRICLQPPPTSRTPFPPPRLPAL
EQGPGGLWVWGATAVSQLLWPAGLGGSGGSQAAVLVQQWVSYADTELIPAACGATLPALG
LRSPAQDPQAALGALGRALSPLEEWLRLHTYLAGEAPTLADLAAVTALLLPFRYVLDPSA
RQVWGNVTRWFLTCVQQPEFRAVLGEVVLYSGARPFSQQPGPEVAAPPKTAAQLKKEAKK
REKLEKFQQKQKMQQQQPPPGEKKPKPEKKEKRDPGVITYDLPTPPGEKKDVSGTMPDSY
SPQYVEAAWYPWWEQQGFFKPEYGRPSVSTPNPRGVFMMCIPPPNVTGSLHLGHALTNAI
QDSLTRWHRMLGETTLWNPGCDHAGIATQVVVEKKLWRERGLSRHQLGREAFLQEVWKWK
EEKGDRIYHQLKKLGSSLDWDRACFTMDPKLCEAVTEAFVRLHEEGVIYRSTRLVNWSCT
LNSAISDIEVDKKELTGRTLLPVPGYKEKVEFGVLVSFAYKVQGSDSDEEVVVATTRIET
MLGDVAVAVHPEDSRYQHLKGKSVRHPFLSRSLPIVFDDFVDMAFGTGAVKITPAHDQND
YEVGQRHGLEAISIMDSRGALVNVPPPFLGLPRFEARKAVLAALKEQGLFRGVQDNPMVV
PLCNRSKDVVEPLLRPQWYVRCGEMAQAASAAVTRGDLRILPEAHQRTWHAWMDNIRDWC
ISRQLWWGHRIPAYFVTVNDPAVPPGEDPDGRYWVSGRSEAEAREKAAKEFGVTPDKISL
QQDEDVLDTWFSSGLFPFSILGWPNQSEDLSVFYPGTLLETGHDILFFWVARMVMLGLKL
TGRLPFREVYLHAIVRDAHGRKMSKSLGNVIDPLDVIHGVSLQGLHEQLLNSNLDPSEVE
KAKEGQKADFPAGIPECGTDALRFGLCAYTSQGRDINLDVNRILGYRHFCNKLWNATKFA
LRGLGKDFVPSPTSQPGGHESLVDRWILSRLAEAVKLSNHGFQTYDFPAVTTSQYSFWLY
ELCDVYLECLKPVLNGEDQAAAECARQTLYTCLDVGLRLLSPFMPFVTEELFQRLPRRAP
QTPPSLCVTPYPEPSECSWKDPEAEAALELALSITRAVRSLRADYNLTRIKPDCFLEVAD
EATGALASAVAGYVQALASAGVVAVLAPGAPAPQGCAVALASDRCSIHLQLQGLVDPARE
LGKLQAKRGEAQRQAQRLQERRATPGYSVKVPLEVQEADEAKLQQTEAELRKVDEAITLF
QKML
NT seq
3795 nt
NT seq
+upstream
nt +downstream
nt
atgtccatcctttacgtctcccctcaccccgatgccttccccagcctccgggccctcata
gctgctcgctatggggaggctggagagggaccaggatggggaggagcccacccccgaatc
tgtctccagccgcccccaaccagtaggacgccctttcccccaccccgcctgccagccctg
gagcaggggcccggtgggctgtgggtgtggggggccacggctgtgtctcagctgctgtgg
ccagcgggcctcgggggctctgggggcagccaggcggctgtcctcgtccaacagtgggtc
agctacgccgacacggagctaataccggctgcctgtggggctacgctgccggccctggga
ctgcgaagcccagctcaggacccccaggctgccctgggagccctgggcagggccttgagc
cccttggaggagtggctccgtctgcacacctacctggctggggaggcccccacgctggct
gacctggcagctgtcacagccctgctgctgccgttccgatatgtcctggacccctcggcc
cgccaggtctggggtaacgtgacccgctggttcctcacgtgcgtccagcagccggaattc
cgcgccgtgttgggagaagtggttctgtactcgggggccaggcccttctctcagcagcca
ggccctgaggtggctgcacccccaaagacagctgctcagctcaagaaagaggcaaagaag
cgggagaagctagaaaaattccaacagaagcagaaaatgcagcagcagcagcccccccca
ggggagaagaaaccaaaaccagagaagaaggagaaacgggatcctggggtcatcacctat
gacctcccaaccccacccggagagaagaaagacgtcagtggcaccatgcctgactcatac
agcccgcagtacgtggaggccgcctggtacccttggtgggagcaacagggcttctttaag
ccggagtatgggcgtcccagcgtgtccacgcccaacccccgaggggtcttcatgatgtgc
atcccaccccccaacgtgacgggctccctgcacctgggccacgcgctcaccaacgccatc
caggactccctgactcgatggcaccgcatgcttggggagaccacgctgtggaaccctggc
tgtgaccacgcgggcattgccacacaggtggtggtggagaagaagctgtggcgagagcgg
ggcctgagccggcaccagctgggccgcgaggcctttctgcaggaggtctggaagtggaag
gaggagaaaggtgaccgcatttaccaccagctgaagaagcttggcagctccttggactgg
gaccgagcctgcttcaccatggaccctaaactctgcgaagctgtgacggaggcttttgtt
cggcttcacgaggaaggcgtcatctaccgcagcacccggctcgtcaactggtcctgcacc
ctcaactcggccatctccgacatcgaggtggacaagaaggagctgacgggccgcaccctg
ctccccgtgcctggctacaaggagaaggtggagttcggggtcctcgtgtcctttgcctac
aaggtccaaggctcagacagtgacgaggaggtggtggtggcaacgactcggatcgagacg
atgctgggcgatgtggctgtggctgtgcacccagaagattccagataccagcacctgaag
gggaagagcgtgaggcacccgttcctgtcgcggagcctgcccatcgtcttcgatgacttc
gtggacatggcatttggcacaggtgcagtgaagataacccctgcccacgaccagaatgac
tacgaggtggggcagcggcacgggctggaggccatcagcatcatggactcccgaggggcc
ctggtcaacgtgcccccacctttcctgggcctgcccaggtttgaggccaggaaggcggtg
ctggctgcgctgaaggagcagggactgttccgtggcgtccaggacaaccccatggtggtg
ccgctttgcaaccgctccaaggacgtggtggagcctctactgcggccacagtggtacgtg
cgctgcggggagatggcccaggccgccagcgctgccgtgacccggggtgacctccgcatc
ctgcccgaggcccatcagcggacttggcacgcctggatggacaacatccgggactggtgc
atttcccggcagctgtggtggggccaccgcatcccggcctacttcgtcaccgtcaatgac
cctgcggtgccccctggggaggaccccgacgggcggtactgggtgagtggacgcagcgag
gcagaggcccgcgagaaggcggccaaggagtttggtgtgacacctgacaagatcagtctg
cagcaagatgaggatgtattggacacctggttctcctctggcctctttcccttttccatc
ttgggctggcccaaccagtcagaagacctgagtgtgttctacccggggacactactggaa
acaggccacgacatcctcttcttctgggtggcccggatggtcatgctcggcctgaagctc
accggcaggctgcccttcagagaggtctacctccacgccatcgtgcgagacgcccatggc
cggaagatgagcaagtctctaggcaacgtcatcgaccccctggatgtcatccacggagtc
tccctgcagggcctccatgagcagctgctgaacagcaacctggatcccagcgaggtggag
aaggctaaggaagggcagaaggcggacttcccggcggggattcctgagtgtggcaccgac
gccctccggtttggactgtgcgcctacacatcccaaggccgtgacatcaacctggacgtg
aaccggattttgggttaccgccatttctgcaacaaactttggaatgccaccaagttcgcc
ctccgtggcctggggaaggatttcgtgccctcgcctacctcccagcccgggggccacgag
agcctggtggatcgctggatcctcagccggctggcggaagccgtgaaactcagcaaccat
ggtttccagacctatgacttcccagctgtcaccacctcccaatatagcttctggctctat
gagctctgtgatgtctacctggagtgcctgaagcccgtcctgaacggcgaggaccaggcg
gcggccgagtgtgcgcgccagaccctctacacctgcctggacgttggcctgcggctgctg
tcacccttcatgccctttgtgaccgaggagctgttccagaggctgccccgacgggcacca
cagaccccccccagcctctgcgtcaccccgtaccccgagccctccgagtgctcctggaag
gaccctgaggcagaagccgccctcgaactggcgctcagcatcacgcgagctgtgcggtcc
ctgcgtgccgactacaacctcacccgcatcaagcccgactgtttcctggaagtggccgac
gaggccacgggcgccctggcgtcggcagtggcgggctacgtgcaggcactggccagcgcg
ggtgtggtggcagtcctggcgccgggagctcccgcaccacagggctgtgccgtggccctg
gcctctgaccgctgctccatccacctgcagctgcaggggctggtggacccggcccgggag
ctgggcaagctgcaggccaagcgaggcgaggcccagcgtcaggcccagcggctgcaggag
cgccgggccaccccaggctactctgtcaaggtgcccctcgaagtccaggaggcagatgaa
gccaagctccagcagacagaagcagagctcaggaaggtggacgaggccatcaccctgttt
cagaagatgctgtga
DBGET
integrated database retrieval system
