Oryctolagus cuniculus (rabbit): 100353161
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Entry
100353161 CDS
T03373
Name
(RefSeq) 5'-3' exoribonuclease 2 isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
ocu
Oryctolagus cuniculus (rabbit)
Pathway
ocu03008
Ribosome biogenesis in eukaryotes
ocu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
100353161
09123 Folding, sorting and degradation
03018 RNA degradation
100353161
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ocu03021
]
100353161
03019 Messenger RNA biogenesis [BR:
ocu03019
]
100353161
03009 Ribosome biogenesis [BR:
ocu03009
]
100353161
03016 Transfer RNA biogenesis [BR:
ocu03016
]
100353161
Transcription machinery [BR:
ocu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100353161
Messenger RNA biogenesis [BR:
ocu03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
100353161
Ribosome biogenesis [BR:
ocu03009
]
Eukaryotic type
Pre-60S particles
RNases
100353161
Transfer RNA biogenesis [BR:
ocu03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
100353161
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
100353161
NCBI-ProteinID:
XP_002710988
Ensembl:
ENSOCUG00000013468
UniProt:
G1T5H2
LinkDB
All DBs
Position
4:complement(22868981..22950598)
Genome browser
AA seq
950 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD
RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPKPCGLCNQFGHEVKDCEGLPREKKGKHDELADSLPCAEGE
FIFLRLNVLREYLERELTMASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDEDSFRRRQKE
KRKRMKRDQPAFTPSGILTPHALGSRNSPGSQVASNPRQAAYEMRMQNNSSPSISPNTSF
TSDGSPSPIGGIKRKAEDSDSEPEPEDNVRLWEAGWKQRYYKNKFDVDAADEKFRRKVVQ
SYVEGLCWVLRYYYQGCASWKWYYPFHYAPFASDFEGIADMPSDFEKGTKPFKPLEQLMG
VFPAASGNFLPPSWRKLMSDPDSSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRA
ALEEVYPDLTPEENRRNSLGGDVLFVGKHHPLHDFILELYQTGSAEPVDVPPELCHGIQG
KFSLDEEAILPDQVVCSPVPMLRDLTQNTAISINFKDPQFAEDYIFKAVLLPGARKPAAV
LKPSDWEKSSNGRQWKPQLGFNRDRRPVHLDQAAFRTLGHVMPRGSGAGMYSNAAPPPAT
YQGNLYRPLLRGQAQIPKLMSNMRPQDSWRGPPPLFQQQRFDRGVGAEPLLPWNRMIQTQ
NAAFPPNQYQMLAGPGGYPPRRDDRGGRQGYPREGRKYPLPPPSGRYSWN
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggcgttcttccgctggctcagccgcaagtatccgtccatcattgtcaac
tgcgtggaagagaagccaaaagaatgcaatggtgtaaagattccagttgatgccagtaaa
cctaatccaaatgatgtggagtttgataatctgtatttggatatgaatggaatcatccat
ccctgtactcatcctgaggacaaaccagcaccaaaaaacgaagatgaaatgatggttgca
atttttgagtacattgacaggcttttcaatattgtaagaccaagaagacttctctacatg
gcaatagatggagtggcaccacgtgctaaaatgaaccagcaacgttcaaggagattcaga
gcatcaaaagaagggatggaggcagctgtagagaagcagcgagtcagggaagagatattg
gcgaaaggtggctttcttcctccagaagaaatcaaagaaagatttgacagcaactgtatt
acaccaggaactgagttcatggacaatcttgctaaatgccttcgctattacatagctgat
cgtttaaataatgaccctgggtggaaaaatttgacagtaattttgtctgatgccagtgct
cctggtgaaggagaacataaaatcatggattacattagaagacaaagagcccagcctaac
catgacccaaatactcatcattgtttgtgtggagctgatgctgatctcattatgcttggc
cttgctacacatgaacccaactttaccattattagagaagaattcaaaccaaacaaaccc
aaaccatgtggtctttgtaatcagtttggacatgaggtcaaggattgtgaaggtttgcca
agagaaaagaagggaaagcacgatgaacttgctgatagtcttccttgtgcagaaggggag
tttatcttccttcggcttaatgttctccgtgagtatttggaacgagaactcaccatggcc
agcttaccgttcacgtttgatgttgagaggagtattgatgactgggtcttcatgtgcttc
tttgtgggaaatgacttccttcctcacttgccgtcgttagagattagggaaggtgcaatt
gaccgcttagttaatatatacaagaacgtggtacataaaactgggggttaccttacagaa
agtggttatgtcaatctgcaaagagtacagatgatcatgttagcagttggtgaagttgag
gatagcatttttaaaaagagaaaagatgatgaggacagttttagaagacgacagaaagaa
aaaagaaagaggatgaagagagatcaaccagcttttactcctagtggaatattaacccct
catgcgttgggttcaagaaattcaccaggttctcaagtagccagtaatccgagacaagca
gcctatgaaatgaggatgcagaataactccagtccttcaatatctcctaatacgagtttc
acgtctgatggctccccgtctccgataggaggaattaagcggaaagcagaagacagtgac
agtgaacctgagccagaggataacgtcaggttatgggaagctggttggaaacagcggtat
tacaagaacaaatttgatgttgatgcagctgatgagaaattccgccgtaaagttgtgcag
tcttacgttgaaggactctgctgggttcttcgatattattaccagggctgtgcttcctgg
aagtggtattatccattccattatgcaccgtttgcttcagactttgaaggaattgcagac
atgccttctgactttgagaagggcacaaaaccgtttaaacctctggaacagcttatggga
gttttcccagctgcaagcggtaactttctacctccgtcatggcggaagctcatgagtgat
cctgattctagtataattgacttctatcctgaagattttgctattgatttgaatggaaag
aaatatgcatggcaaggtgttgctctgttgccgttcgtggacgagcgcaggctgcgagcc
gccctggaagaggtgtacccagacctgactccagaagagaatagaagaaacagcctcgga
ggagacgtgttgtttgtggggaaacatcacccactccacgacttcattttagagctatat
cagactgggtctgcagagccagtggatgtgccacctgaactatgtcatgggattcaagga
aagttttctttggatgaagaagccattcttccagatcaagtggtatgttctcctgttccc
atgttacgggatctgacacagaacactgcaatcagtattaattttaaagaccctcaattt
gcagaagattacatttttaaagctgtcctgctgccgggagcaagaaagccagcagcagtg
ctgaaacccagtgactgggaaaaatctagcaatggccggcagtggaagccgcagctcggc
tttaaccgggaccggcggcctgtccacctggatcaagcagccttcaggactttgggccac
gttatgccaagaggctctggagctggcatgtacagcaatgctgcaccaccacccgccact
tatcagggaaacttatacaggccactgttgagaggacaggcccagattcccaaacttatg
tcaaacatgaggccccaggattcctggcgcggtcccccccctcttttccagcagcagaga
ttcgacagaggagtcggggctgaacctctgctgccgtggaaccggatgatccaaacccag
aatgcagccttcccgccaaaccagtaccagatgctagccgggccgggcgggtacccaccc
cgccgagatgatcgtggagggagacagggatatcccagagaaggaaggaaataccctttg
ccaccaccctcaggaagatacagttggaattaa
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