Oryctolagus cuniculus (rabbit): 100353953
Help
Entry
100353953 CDS
T03373
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
ocu
Oryctolagus cuniculus (rabbit)
Pathway
ocu04140
Autophagy - animal
ocu04148
Efferocytosis
ocu05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
100353953
04148 Efferocytosis
100353953
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
100353953
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocu04131
]
100353953
Membrane trafficking [BR:
ocu04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
100353953
Hops complex
100353953
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
Clathrin
zf-RING_5
zf-C3HC4_2
zf-RING_16
zf-RING_Vps41
zf-ANAPC11
zf-RING_2
zf-RING_UBOX
KNOX2
zf_RING_Vps8
zf-rbx1
WD40_Prp19
Motif
Other DBs
NCBI-GeneID:
100353953
NCBI-ProteinID:
XP_002718019
Ensembl:
ENSOCUG00000004889
UniProt:
G1SMQ8
LinkDB
All DBs
Position
17:complement(32104750..32113876)
Genome browser
AA seq
973 aa
AA seq
DB search
MATILDEYEDSLSRSAVLQPGCPSVGIPHSGYVNAQLEKEVPIFTKQRIDFTPSERITSL
VVSCNQLCMSLGKDTLLRIDLGKANEPNHVELGRKDDARVHKMFLDHTGSHLLIALSSTE
VLYVNRNGQKVRPLARWKGQLVESVGWNKALGTESSTGPILVGTAQGQIFEAELSASEGG
LFGPAPDLYFRPLYTLNEEGGPAPVCSLEAERGPDGRGFVIATTRQRLFQFIGRPVEGAE
TQGFSGLFAAYTDHPPPFREFPSNLGYSELAFYTPKLRSAPRAFAWMMGDGVLYGALDCG
RPDSLLSEERVWEYPEGVGPGASPPLAIVLTQFHFLLLLADRVEAVCTLTGQVVLRDHFL
EKFGPLRHMVKDSATGQLWAYTERAVFRYHVQREARDVWRTYLDMNRFDLAKEYCRERPD
CLDTVLAREAEFCFRQRRYLESARCYALTQSYFEEIALKFLEARQEEALAEFLQRKLASL
KPSERTQATLLTTWLTELYLSRLGALQGDPDALGLYRETRERFRAFLSSPRHKEWLFASR
ASIHELLASHGDTEHMVHFAVIMQDYERVVAYHCQHEAYEEALAVLARHRDPQLFYKFSP
VLIRHIPRQLVDAWIEMGSRLDARQLIPALVNYSQGGETQQVSQAIRYMEFCVNVLGETE
QAIHNYLLSLYARGQPASLLAYLEQAGASPHRVHYDLKYALRLCAEHGHHRACVHVYKVL
ELYEEAVDLALQVDVDLAKQCADLPEEDEELRKKLWLKIARHVVQEEEDVQTAMACLASC
PLLKIEDVLPFFPDFVTIDHFKEAICSSLKAYNHHIQELQREMEEATASAQRIRRDLQEL
RGRYGTVEPQDKCATCDFPLLNRPFYLFLCGHMFHADCLLQAVRPGLPAYKQARLEELQR
KLGAAVPPAKGSARAKEAEAGAAAVGPSREQLKADLDELVAAECVYCGELMIRSIDRPFI
DPQRYEEEHLSWL
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atggctaccatcctggatgagtacgaggactcgttgtcccgctcggccgtcttgcagccc
ggctgccccagcgtgggcattccccactcggggtatgtgaacgcgcagctggagaaggag
gtgcccatcttcacgaagcagcgcatcgacttcaccccttccgagcggatcaccagcctc
gttgtctcctgcaaccagctgtgcatgagtctgggcaaggacacgctgctccgcattgac
ttgggcaaggcaaatgagcccaaccacgtggagctggggcgcaaggatgacgccagagtt
cacaagatgttcctggaccacactggctctcacctattgattgctctgagcagcacggag
gtcctgtacgtgaaccgtaatgggcagaaggtccgaccgctagcacgctggaaggggcag
ctggtggagagtgtgggttggaacaaggccctgggcaccgagagcagcacgggcccaatc
ctggtgggtaccgcccaaggccagatcttcgaggcagagctctcggccagcgagggtggg
ctgttcggccctgccccggatctctacttccggcccttgtacacgctaaatgaagaagga
ggtccagcgcctgtgtgctccctcgaggccgagcgtggccctgatggccgcggctttgtc
attgccaccactcgccagcgcctcttccagttcatcggccggccagtggagggggctgaa
acccagggcttctcggggctcttcgctgcctacacggaccaccctcccccgttccgggag
tttcccagcaacctgggctacagcgagttggccttctacacccccaagctgcgctccgca
ccccgggccttcgcttggatgatgggcgacggtgtgctctacggcgcgctggactgcggg
cgccctgactccctgctgagcgaggagcgggtctgggagtacccggagggagtcggtccc
ggcgccagcccgcccctcgccatcgtcctgacccagttccacttcctgctgctgctggcg
gaccgcgtggaggcggtgtgcacgctcacgggccaggtggtgctgcgggaccacttcctg
gagaagttcgggccgctgaggcacatggtgaaagactccgccactggtcagctgtgggcc
tacacggagcgcgccgtcttccgctaccacgtgcagcgggaggcgcgggatgtctggcgc
acctacctggacatgaaccgcttcgacctggccaaagagtactgccgcgagcggcccgac
tgcctggacaccgtgctggcccgcgaggccgagttctgtttccgccagcggcgctacctg
gagagcgcgcgctgctacgcgctgacgcagagctactttgaggagattgcgctcaagttc
ttggaggcccggcaggaggaggctctggctgagttcctgcagcggaagctggccagtttg
aagccctcggagcgcacccaggccacactgctgaccacctggctgacggagctctacctg
agccggctcggggccctgcagggcgacccagacgccctgggcctctaccgggaaacccgg
gagcgcttccgggccttcctcagcagcccccgccacaaggagtggctgttcgccagccgg
gcctccattcacgagctgctcgccagccacggggacacggagcacatggtgcacttcgcg
gtgatcatgcaggactacgagcgcgtcgtggcctaccactgccagcacgaggcctacgag
gaggccctggccgtgctggcccgccaccgcgacccgcagctcttctacaagttctcgcct
gttctcatccggcacatcccccgccagctggtagatgcctggattgagatgggcagccgg
ctggatgcccggcagctcatccctgccctggtgaactatagccagggtggcgagacccag
caggtgagccaggccatccgctacatggagttctgtgtgaacgtgctgggggagactgag
caggccattcacaactacctgctgtccctgtacgcccgcggccagccagcctcactgctg
gcctatctagagcaagctggggccagcccgcacagagtgcattacgacctcaagtacgcg
ctgcgcctgtgtgccgagcacgggcaccaccgtgcttgcgtccacgtctacaaggtcctg
gagctgtatgaggaggctgtggatctggccctgcaggtggacgtggacctggccaagcag
tgtgcagacttgcccgaggaggatgaggaactgcgcaagaagctgtggctgaagatcgcg
cggcacgtggtgcaggaggaggaagacgtccagacggccatggcgtgcctggccagctgc
cccttgctcaagatcgaggacgtgctgcccttcttcccggattttgtcaccattgaccac
ttcaaggaagcgatctgcagctcactgaaggcctacaaccaccacatccaggagctgcag
cgggagatggaagaggccacggccagcgcccagcgcatccggcgagacctgcaggagctg
cggggccgctacggcaccgtagagccccaggataaatgcgccacctgtgacttccccctc
ctaaaccgccctttctacctgttcctctgtggccacatgttccatgctgactgcctgctg
caggctgtgcgtccgggcctgcctgcctacaagcaggcccggctggaggagctgcagcga
aagctgggggctgcagtgcccccagccaagggctccgcccgggccaaggaggccgaggca
ggggctgccgctgtggggcccagccgggagcagctcaaggccgacctggatgaactggtg
gcggccgagtgtgtgtactgtggggagctgatgatccgctccattgaccggcccttcatc
gacccccagcgctacgaggaggagcacctcagctggctgtag
DBGET
integrated database retrieval system
