Oryctolagus cuniculus (rabbit): 100354017
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Entry
100354017 CDS
T03373
Name
(RefSeq) vacuolar protein sorting-associated protein 16 homolog isoform X1
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
ocu
Oryctolagus cuniculus (rabbit)
Pathway
ocu04140
Autophagy - animal
ocu04148
Efferocytosis
ocu05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
100354017
04148 Efferocytosis
100354017
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
100354017
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocu04131
]
100354017
Membrane trafficking [BR:
ocu04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
100354017
Hops complex
100354017
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
Motif
Other DBs
NCBI-GeneID:
100354017
NCBI-ProteinID:
XP_002710925
Ensembl:
ENSOCUG00000012371
UniProt:
G1T365
LinkDB
All DBs
Position
4:17490808..17513614
Genome browser
AA seq
839 aa
AA seq
DB search
MDCYTANWNPLGDSAFYRKYELYSMDWDLKEELRDCLVAAAPYGGPIALLRNPWRKEKAA
SLRPVLEIYSASGVPLASLLWKSGPVVSLGWSAEEELLCVQEDGAVLVYGLHGDFRRHFS
MGNEVLQNRVLDARIFHTEFGSGVAILTGAHRFTLSANVGDLKLRRMSEVPGLQSAPSCW
TTLCQDRVAHILLAVGPDLYLLDHATCSMVTPPGLAPGVSSFLQMAVSFTYRHLALFTDT
GYIWMGTASLKEKLCEFNCNIRAPPKQMVWCTRPRSKEKAVVVAWERRLMVVGDAPESIQ
FVLDEDSYLVPELDGVRIFSRSTHEFLHEVPAASEEIFKIASMAPGALLLEAQKEYEKES
QKADEYLREIQELGQLTQAVQQCIEAAGHEHRPDMQKSLLRAASFGKCFLDRFPPDSFVR
MCQDLRVLNAVRDYHIGIPLTYSQYKQLTIQVLLDRLVLRRLYPLAIQICEYLRLPEVQG
VSRILAHWACYKVQQKDVSDEDVARAINQKLGDTPGVSYSDIAARAYGCGRTELAIKLLE
YEPRSGEQVPLLLKMKRSKLALNKAIESGDTDLVFTVLLHLKNELNRGDFFMTLRNQPMA
LSLYRQFCKHQELETLKDLYNQDDNHQELGSFHIRASYAAEERIEGRVAALQTAADAFYK
AKNEFAAKATEDQMRLLRLQRRLEDELGGRFLDLSLHDTVTTLILGGHNKRAEQLARDFR
IPDKRLWWLKLTALAELEDWEELEKFSKSKKSPIGYLPFVEICMKQHNKYEAKKYASRVG
PEQKVKALLLVGDVAQAADVAIEHRNEAELSLVLSHCTGATDGATADKIQRARAQAQKK
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atggactgctacacggcgaactggaacccactcggggactctgccttttaccggaaatat
gagctgtacagcatggactgggacctgaaggaggaactcagggactgcctggtggctgcc
gcaccctatgggggtcccattgcgctgctaaggaacccctggcggaaggagaaagctgcc
agcctgcggccagtgctcgagatctactctgcttccggcgtgccgctagccagcctgctg
tggaagagcgggcctgtggtgtccctgggctggtcggcggaggaggagctgctgtgcgtg
caggaagatggtgcagtgctggtgtacgggcttcacggcgacttccggagacacttcagc
atgggcaatgaggtgctccagaatcgggttctggatgcccggatctttcatactgagttt
ggttccggagtggccatcctcacaggggcccatcgcttcaccctcagtgccaatgtgggt
gacctcaaactccgccggatgtcagaggtgccaggtttacaaagtgcaccctcctgctgg
accacactgtgccaggaccgagtagcacacattcttctggccgtggggcctgatctttac
ctcctggaccatgcaacctgctccatggtgacgccccctggcctggccccaggagtgagc
agcttcctgcagatggccgtctcctttacctaccggcacctggcgcttttcacagacaca
ggctacatctggatggggacggcatcactcaaggagaagctgtgtgagttcaactgtaac
atcagggcacccccgaagcagatggtctggtgcacccgtcctcgcagcaaggaaaaggcc
gttgtggtagcctgggagaggcggctgatggtagtgggcgacgcacccgagagcatccag
ttcgtgctggatgaggactcttacctggtgcctgaactcgacggggtccgcatcttctct
cgcagcacccacgagttcctgcatgaggtgccagcggccagtgaggagatcttcaaaatt
gcctcgatggcccctggagctctgctgttggaggcccaaaaggagtatgagaaagaaagc
cagaaggcggatgaatacctgcgggagatccaggaactggggcagctgacacaggccgtg
cagcagtgcattgaggccgcggggcacgagcaccgtcccgacatgcagaagagtctgctc
agggcggcgtcctttggaaagtgtttcctggacagatttccacccgacagctttgtgcgc
atgtgtcaggacctgcgagtgctcaatgctgttcgcgactaccacatcgggatccctctc
acctacagccaatacaagcagcttaccatccaggtgctgctggacagactagtgttgcgg
agactttacccgctggccatccagatctgcgagtacctgcgccttcctgaagtacagggc
gtcagcaggatcctggctcactgggcctgctacaaggtgcaacagaaagatgtgtcagat
gaagatgttgctcgagccattaaccagaaactgggggacacgcctggcgtctcttactcc
gacattgctgcgcgggcctatggctgtggccgcacggagctggccatcaagctcctagag
tatgagccacgctcaggagaacaggtaccccttctcctaaagatgaaaaggagcaaactg
gcactgaacaaggccattgagagtggggacactgacctggtgttcacggtgttgctgcac
ctgaagaatgagctgaaccgaggagactttttcatgacgcttcggaaccagcccatggct
ctgagtttgtatcgacagttctgtaagcatcaggagctagagacgctgaaggacctttat
aatcaggatgacaatcaccaggaactgggcagcttccacatccgagccagctatgctgca
gaagagcggatcgaggggcgagtagcagctctgcagacagcagctgatgccttctacaag
gccaagaatgagtttgcagccaaggccacagaagaccaaatgcgcctcctccggcttcag
cggcgcctagaagatgagctagggggccgattcctagacctgtctctacacgacaccgtc
accactcttatccttggtggccacaacaagcgtgcagagcagttggcacgtgacttccgc
attcctgacaaaaggctgtggtggctgaagctgactgccctggcagagctagaggactgg
gaggagctggagaagttttccaagagcaagaagtcgcccattggctacctgccctttgtg
gagatctgcatgaaacaacataacaaatatgaggccaagaagtatgcttcccgcgtgggc
cctgagcagaaggtcaaggctctgcttcttgttggggatgtggcacaggccgcagatgtg
gccatcgagcaccggaacgaggctgagctgagccttgtgttatcccactgcactggagcc
acggatggggccacggctgacaagattcaacgggccagagcacaagcccagaagaagtag
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