Oryctolagus cuniculus (rabbit): 100354054
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Entry
100354054 CDS
T03373
Name
(RefSeq) probable methyltransferase TARBP1 isoform X1
KO
K15333
tRNA guanosine-2'-O-methyltransferase [EC:
2.1.1.34
]
Organism
ocu
Oryctolagus cuniculus (rabbit)
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ocu03016
]
100354054
03036 Chromosome and associated proteins [BR:
ocu03036
]
100354054
Enzymes [BR:
ocu01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.34 tRNA (guanosine18-2'-O)-methyltransferase
100354054
Transfer RNA biogenesis [BR:
ocu03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
100354054
Chromosome and associated proteins [BR:
ocu03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
100354054
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SpoU_methylase
TARBP1
Motif
Other DBs
NCBI-GeneID:
100354054
NCBI-ProteinID:
XP_002717373
Ensembl:
ENSOCUG00000017418
UniProt:
G1TDN7
LinkDB
All DBs
Position
16:complement(51620152..51697033)
Genome browser
AA seq
1629 aa
AA seq
DB search
MEWVLAEALLSQSRDPRILLGALCRGEASAERVETLRFLLQRLEDQEARGGGGGGGGALP
EAAREVAAGYLVPLLRELRGRPASCPDAGPLPRHRRRVLRAAGAALGSCARLAGGPQLAA
ALAEEALRDLLAGLRAPGAEAAVEVLAAIGPCLRPLEDGPLLERVAQAAVALALGGDEDE
AEIAENAAALVAGRLLPALGHCGGAALRAVWAGLAATGPPSGPGHVGPKLLVLSALAEKL
LPEPGAERAPCAREAGPDARRCWRFWRTVQAGLGQAEDALTRKRARYLLQRAVEVSAELG
ADCTCSPQEANGPSLFWWSEKKKDELLKFWENYILIMETLEGNQIHVIKPVLPKLNNLFE
YAVSEENGCWLFHPSWHMCIYKRMFESENKILTKEGVIHFLELYETKLLPFSPEFSEFII
GPLMDALSESSLYSRSPGQLIGSGSPLGLKLQKFLVTYISLLPEEIKSGFLLKFIQKMTS
RHWCAVPILFLSKALANIPRCKALGVEGLLALRDVIQCTMITHQILLRGAAQCYLLQTAM
HLVDVEKVSLSDVSTFIMSLRQEESLGRGTSLWTELCDWLRVNESHFRQSPVCGSAGLRE
TSLNAYVKNLVQEYVTSPAWETGENCFLPDGFEARLTATMILLAVDVEGMKTQPSEKRRT
QNVLRIFLDPLLDALMKLGTNAYMPLLKTDRCLQLLWKLLHTCMLKGSSAHDDEVSTLLQ
NSVMSATESISEFILRRLTMNELSSVSDLERCHLYLMVLTELMNLHSNVGWKGGNSIWRV
ISPLKNASIRHLQEMDGGQEPTLGIQIQKVVSMATLAVVCEAVDRKPELQLDSLDVGPTE
RFLSCLQLNQTLQKPHTEEQSRCAHPPESSSFFEESSSSQGWGKIVAQYIHDQWVCLSFL
LKKYHTLIPATENEIPDPLLPAVQMPVRTLQSALEALTILPSDQVLPVFQCMKILVPKLL
TSSESLCIESFDMAWKIISSLSNTQLTFWPNLKAFVQFVFDNTILTIAAKTKSQAYFKIK
EIMYKIIEMSALKTGVFNTLINYCCQSWIVSASHGSQDSLSSAKHYSEMVLEACIFGTVF
RRDQRLIQDVQTFVENLGHDCAANAIIENAKREDHYVRICAIKFLCLLDGSNVSHKLFLE
DLAVKLLDKDELVSKSRARCCVNSLQHRVKNRIWQTLLVLFPRFDQNFLNGIIDKIFQAG
FVNNQASIKYFIEWIIILILHKFPQFLPKFWDCLSCGEDKFKTSICTFLSVLTHLDVITQ
NIPEKKLILKQALVLVLQWCFNHNFSIRLYALMALKKIWNMCKAQRVEEFDALAPVIESS
LDQVESMHGAGNAKKNWQRIQEHFFFATFHPLKDYCLETIFYILPRLAGLVEDEWIAVSK
LTGFAPIPLDAGFQWYLSQTQLRELKPGDWSQQDIGSSPGEAEAEWSDVQKKVIPWKTNV
PDLDLELMFQDRAAKLGKSNSRLIVVASLIDKATNLGGLCRTCEVFGASVLAVGNLQCVS
DKQFQHLSVSAEQWLPLVEVRPPQLVDYLQQKKAEGYTIIGVEQTAKSLDLTRYCFPEKS
LLLLGNEREGIPANLIQQLDVCVEIPQQGVVRSLNVHVSGALLIWEYTRQRLLQRPGAGP
CRALETFPF
NT seq
4890 nt
NT seq
+upstream
nt +downstream
nt
atggagtgggtgctcgcggaagcgctgctttcgcagagccgggatccgcggatcctgctc
ggggcgctgtgccgcggggaggcgtccgcggagcgcgtggagacgctgcgcttccttctg
cagcggctcgaggaccaggaggcgcgcggcggcggcggcggcggcggcggcgcgctcccg
gaggcggcgcgcgaggtcgccgcagggtacctcgtgccgctgctgcgggaattgcgcggg
cgtcccgcgagctgcccggacgccggcccgctgccacgccaccgccggcgcgtgctgagg
gcggcgggcgcggccctgggctcgtgcgcccgcctcgccggaggcccgcagctggcggcc
gcgctggcggaggaggcgctgcgggacctgctcgctgggctgcgcgcgccgggcgccgag
gcggccgtggaggtgctggcagccatcgggccctgcctgcggccccttgaggacgggccg
ctgctggagcgggtggcgcaagccgccgtcgccctggcgctgggcggcgacgaggatgag
gccgagatcgccgagaacgcggcggcgctggtggccgggcggctgctgccggcgctgggc
cattgcggcggggcggctctgagggccgtgtgggctgggctggccgcgacggggccgcct
tcggggccgggccacgtcgggccgaagctgctggtgctgagcgcgctggccgagaagctg
ctgcccgagcctggcgcggagcgcgccccctgcgcgcgcgaggcggggccggacgcccgg
cgctgctggcgcttctggaggacggtgcaggcggggctgggccaggcggaggacgccctg
acgcgcaagcgagcgcgctacctgctgcagagggcggtggaggtgtctgcggagctgggg
gccgactgcacctgcagcccccaggaggcaaacggcccaagtctgttttggtggtctgag
aagaaaaaggatgaacttctaaagttttgggaaaattatattttaattatggaaactctt
gaaggaaatcagatacatgttataaagccagtcttaccaaagctaaacaatctgtttgaa
tacgcggtgtcagaggaaaatggatgttggctctttcacccatcatggcacatgtgtatt
tataaaagaatgtttgaaagcgaaaacaaaatcctgaccaaagaaggtgttatccatttc
ttggagctgtatgaaacaaagcttcttccattttcgccagaattctctgagtttattatt
ggaccattgatggacgctctttcagagagttctctgtatagcaggtccccaggccagctc
ataggaagtggttctccattaggattgaaattacagaagtttttagtcacttatatttct
cttcttccagaagaaataaagagtggtttcctattgaagtttattcagaagatgacgagt
agacattggtgtgctgttcccattttgtttctgtctaaggctctggcaaacatcccaaga
tgtaaggccctgggcgtagaagggcttctggctctcagggacgttattcagtgcaccatg
atcacacatcagattctcctgagaggggcagctcagtgctatcttcttcaaacagccatg
cacttggtggatgtggagaaggtatcactttctgacgtctcgacttttatcatgtctctg
agacaagaggagtccttgggacgaggaacttccctgtggacagagctctgtgactggttg
cgagtgaatgaaagccactttaggcaatctccagtttgtggctctgctggactccgtgag
acatcactaaatgcttacgtaaagaacctcgttcaagagtatgtgacgtcgcctgcgtgg
gaaacaggagaaaattgctttctgcctgatggctttgaagccaggctgacggctacgatg
atcttgctggctgtggatgtggaaggaatgaagactcagcctagtgaaaagcggaggaca
cagaatgtattgaggatattcttagatcctctgctggatgccctaatgaagctgggtaca
aatgcctacatgcccttgctgaaaactgacagatgcctccagctgctgtggaagctcttg
cacacttgcatgttgaagggttccagtgcccacgatgatgaggtgtctactcttcttcag
aactcggtcatgtctgctacagagagcatttctgaattcattctcagaagacttacaatg
aacgagctaagcagtgtttcagacctggagcgttgccatttatacctgatggtattaact
gagctaatgaatctgcattcaaatgtcgggtggaaagggggtaactccatttggagagtt
atttctcctttgaaaaatgcatccattcggcatcttcaggagatggacggtggacaggag
ccaacccttggtattcagattcagaaagtcgttagcatggccaccttggccgtggtatgt
gaggccgtagaccggaagcccgaactgcagctggattcgcttgatgttggacccacagaa
cggttcctgtcctgtcttcagctcaatcagaccctgcagaaaccccacacagaggaacag
agcaggtgtgctcaccccccagagagcagtagtttttttgaggagtcatcatcttcccaa
ggatgggggaaaatcgttgcacaatatatccacgatcagtgggtctgcctgtctttccta
ttgaaaaaatatcacactctgatacctgccacagagaacgaaatcccagaccccttgctg
cctgctgttcaaatgcccgttaggactttgcagtctgcactggaagccctcacaattctg
ccttctgatcaggttttacctgtgttccagtgcatgaaaattttggttcccaagctcctt
acctcctctgaatctctctgcatcgagtcttttgacatggcctggaaaattatatcttct
ttaagcaacactcagctgacattctggcctaatttaaaagcctttgttcaatttgtattt
gataacaccattctgaccattgctgcaaaaaccaagagccaggcgtatttcaaaataaaa
gagattatgtacaaaataattgaaatgtctgctctaaaaactggagtcttcaatacactg
ataaattattgctgccaatcttggatagtgtctgcttcacatgggtcccaagactcgtta
tcaagcgctaaacattatagtgaaatggtccttgaggcttgtatatttggaactgtgttt
aggcgtgatcaaagacttattcaggacgtacagacttttgtagaaaatcttggacatgac
tgtgcagcaaatgctattatagaaaatgctaaaagagaagaccattatgtgagaatttgt
gcaatcaaattcctgtgtttattagatggctcaaatgtatcccataagttgtttttggaa
gatcttgcagtcaagctgttagataaagatgagttggtgtccaagtccagagctcgctgc
tgtgtgaattctctgcagcacagagtgaagaaccgaatatggcagacgctgctcgtgctc
ttccccaggtttgatcagaatttcttgaacggaattattgacaagattttccaggctggt
tttgtcaacaatcaagcatccataaaatattttatagaatggattattatattgattctt
cataaattccctcagtttcttccgaagttctgggattgtttgtcttgtggtgaagataaa
tttaaaaccagcatttgtacatttttatcagttttgacacatttggatgtcattactcag
aatattccagaaaagaagctaatcctgaagcaggcccttgttcttgtgctgcagtggtgt
ttcaaccacaattttagcatccggctgtacgccttaatggctctaaagaaaatctggaac
atgtgtaaagcgcagcgtgttgaagaattcgatgccttggcgcccgtgattgaatccagt
ctcgatcaagtggagagcatgcacggagccgggaatgccaagaagaattggcagcgcatc
caagagcatttcttttttgcaacgtttcacccacttaaggattattgtctggagaccata
ttttacatccttccacgcctcgcgggcctcgtggaggacgagtggatcgccgttagtaaa
ttgaccggcttcgctcccatcccgctggatgcgggatttcagtggtacctttctcaaacc
cagcttcgagaactgaaaccaggcgactggtctcagcaggacataggctccagcccaggt
gaagcagaggcagagtggagtgatgttcagaagaaggtgatcccgtggaagactaatgtt
ccggacttagacctggagctcatgtttcaggaccgtgcagccaaacttggaaagtcgaat
agcagactgattgtggtggcctctctcattgacaaagcaaccaatttaggaggactgtgc
cgcacctgtgaggtgtttggggcctcagtgctggctgttggcaatcttcagtgtgtcagt
gacaaacagttccagcacctcagcgtctcagcggaacagtggctgcctttagtggaggta
aggccgcctcagctggttgattacctgcagcagaagaaagcggaaggttataccatcatt
ggagtggagcaaacggccaaaagcttagacctgacgcgatactgctttcctgagaagtcg
ctgctcttgctgggaaacgaacgggaaggaatccccgccaacctgatccagcagttggac
gtgtgcgtggagatcccgcagcagggtgtcgtgcgctctctgaacgtgcacgtgagcggg
gccctgctgatctgggagtacacgcggcagcggctgctccagcgcccgggggccgggccc
tgccgggctctcgaaacctttcctttttaa
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