Oryctolagus cuniculus (rabbit): 100354442
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Entry
100354442 CDS
T03373
Name
(RefSeq) pre-mRNA-processing factor 17 isoform X2
KO
K12816
pre-mRNA-processing factor 17
Organism
ocu
Oryctolagus cuniculus (rabbit)
Pathway
ocu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100354442
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ocu03041
]
100354442
Spliceosome [BR:
ocu03041
]
Complex C
Other components
Step II factors
100354442
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WDR55
EIF3I
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_SPT8
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_NWD2_C
WD_LRWD1
WDR54
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
100354442
NCBI-ProteinID:
XP_002714958
Ensembl:
ENSOCUG00000001223
UniProt:
G1SF02
LinkDB
All DBs
Position
12:complement(57784538..57836990)
Genome browser
AA seq
579 aa
AA seq
DB search
MSAAIAALAASYGSGSGSESDSDSEGGRCPLPAAESLMHLTKSPSAKPSLAVAVDSAPEV
AVKEDLETGVHLDPAVKEVQYNPTYETMFAPEFGPENPFRTQQMAAPRNMLSGYAEPAHI
NDFMFEQQRRTFATYGYALDPSLDNHQVSAKYIGSVEEAEKNQGLTVFETGQKKTEKRKK
FKENDASNIDGFLGPWAKYVDEKDVAKPSEEEQKELDEITAKRQKKGKLEDEKPGEEKTI
LHVKEMYDYQGRSYLHIPQDVGVNLRSSVPPEKCYLPKKQIHIWSGHTKGVSAVRLFPLS
GHLLLSCSMDCKIKLWEVYGDRRCLRTFIGHSKAVRDICFNTAGTQFLSAAYDRYLKLWD
TETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRSGEIVQEYDRHLGA
VNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLACQS
MDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDGNGKLNIWDWKTT
KLYSRFKAHDKVCIGAVWHPHETSKVITCGWDGLIKLWD
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgtcggctgctattgcagctctggccgcttcctacggttcgggttcggggtccgaatcc
gactcggacagtgaaggcggccgatgtccgctgccagccgccgagtctctcatgcatctg
actaaatcgccttcggccaagccctcgctggcagtggcggtggactcggctccggaggtg
gcagttaaggaagatttggagactggtgttcaccttgaccctgctgttaaagaagttcag
tataatcctacatatgagacaatgtttgctcctgagtttggaccagaaaatccctttaga
actcagcaaatggctgcccccagaaatatgctttctggatatgctgaaccagctcacatc
aatgacttcatgtttgaacagcagagaagaacttttgccacatatggttatgcactggac
ccttcattagataaccaccaagtgtctgccaaatatattggttctgtagaagaagctgaa
aaaaatcaaggtttaactgtgtttgaaactggtcagaagaaaacagaaaagaggaaaaag
ttcaaagaaaatgatgcatctaatattgatggtttcttgggaccgtgggcaaaatatgtg
gatgaaaaagatgtagccaaaccttcagaagaagaacaaaaagagctggatgaaatcaca
gcaaagaggcagaaaaaaggcaaactggaagatgagaaacctggggaggagaagacaatc
ttacatgttaaagaaatgtatgactatcaaggcaggtcctaccttcacatacctcaggat
gttggtgtaaatctacggtcaagtgtgccacctgagaagtgttatcttcccaaaaaacag
attcacatatggtctggacacaccaagggcgtcagtgcagtcagattgtttcctctctct
ggccatttgttgctgtcttgctccatggactgtaaaattaagttgtgggaggtttatgga
gaccgccgctgtctgcgaacatttattggtcacagtaaagccgtaagggacatctgcttc
aacaccgcaggaacacagtttcttagtgcagcctatgacagatacctgaagctctgggac
accgagacgggacagtgtatatcaagatttacaaaccgaaaagtgccctactgtgtcaaa
ttcaatcctgatgaagacaagcaaaatctctttgtggctgggatgtctgataaaaagatt
gtgcaatgggacattcgaagtggagaaattgtgcaggaatatgatcggcatttgggagct
gtcaacaccattgtttttgttgatgaaaacaggagatttgttagtacatctgatgataag
agcctaagagtttgggaatgggacatccctgtggatttcaagtacatagcagaacccagt
atgcactcaatgcctgcagtgactttgtctccaaatgggaaatggctagcatgccaatca
atggacaaccaaatcttaatttttggagcccagaacagatttagattaaataagaaaaaa
atttttaagggccacatggtagcaggttatgcttgtcaggtagacttttcaccagacatg
agctatgtgatttcaggagatggaaatggaaaattaaacatttgggactggaagaccaca
aaactctacagtcggtttaaagctcatgataaagtgtgtataggcgcagtgtggcaccct
catgaaacatctaaagtcataacatgcggctgggatggtctgattaaactgtgggattag
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