Oryctolagus cuniculus (rabbit): 100354709
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Entry
100354709 CDS
T03373
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform X1
KO
K14439
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 [EC:5.6.2.-]
Organism
ocu
Oryctolagus cuniculus (rabbit)
Pathway
ocu04550
Signaling pathways regulating pluripotency of stem cells
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04550 Signaling pathways regulating pluripotency of stem cells
100354709
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ocu03036
]
100354709
Chromosome and associated proteins [BR:
ocu03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
100354709
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
ERCC3_RAD25_C
CUE
TTC3_9th
Motif
Other DBs
NCBI-GeneID:
100354709
NCBI-ProteinID:
XP_008265813
Ensembl:
ENSOCUG00000017283
LinkDB
All DBs
Position
15:complement(52580861..52661015)
Genome browser
AA seq
1025 aa
AA seq
DB search
MNLFNLDRFRFEKRSKIEEAPEATPQPSQPGPSSPISLSAEEENAEGEVSRANTPDSDVT
EKTEDSSVPETPDNERKTSISYFKNQRGIQYIDLSSDSEDIVSPNCSNTVQEKKFNKDTV
IIVSEPSEDEESQGLPTMAQRNDISELEDFSELEDLKDAKLQTLKELFPQRSDSDLLKLI
DSTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSLKKTRIDHGEESNE
SAESSSNWEKQESIVLKLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAEDQDMQYA
SQNEVPNGKEVSSKGQNYPKNTTKTKLKQKFSVKPQNGFNKKRKKNVFNPKKVTEDSEYD
SGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKITELRPF
NSWEALFTKMSKTNGLSEDLIWHCKTLIQERDVVIRLMNKCEDISNKLTKQVTMLTGNGG
GWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLFQ
EGNKGPHLIVVPASTIDNWLREVNLWCPTLNVLCYYGSQEERKQIRCNIHSKYEDYNVIV
TTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQ
NNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILR
RVKEEVLKQLPPKKDQIELCTMSEKQEQLYLGLFNRLKKSINNLEKSTEMCNVMMQLRKM
ANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHIN
NFQLDMDLILDSGKFRVLGHILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLD
GKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAED
RCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSMPADIATLLK
TSMGL
NT seq
3078 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttttcaacctggaccgttttcgctttgagaaaaggagtaaaattgaggaagcg
cccgaagcaaccccacagccctcccagcctggcccttcttcaccaatttctcttagtgct
gaagaggagaatgctgaaggggaagttagcagggcaaacacccctgactcagatgtaact
gagaaaacagaagattcaagtgttccagagactccagataatgaaagaaaaacaagtata
tcatatttcaagaatcaaagaggaatacaatatattgatttgtcttctgatagtgaagat
attgtttccccaaattgctccaatacagttcaagagaaaaaattcaacaaagacacagtg
ataatcgtttctgagccatctgaagatgaggaatcccaaggccttcctaccatggcacaa
agaaatgatatttcagaattggaggacttttcagaattagaagaccttaaggatgctaaa
cttcagaccttgaaggagcttttcccacaaagaagtgacagtgatttgcttaagttgata
gactcaacaagtaccatggatggagcaattgctgctgccttgctgatgtttggtgatgca
ggtggtgggcccaggaaaagaaaattatcttcttcttcagagccatatgaggaagatgaa
tttaatgatgatcaatctttaaaaaagacaagaatagatcatggtgaggagtcaaatgag
tctgcagaatctagcagtaattgggaaaagcaggaaagtattgtactaaaattacaaaag
gagtttccaaattttgataagcaggaactgagagaagtactcaaggaacatgagtggatg
tatactgaagctttagaatctctaaaagtgtttgcggaagaccaagatatgcaatatgct
tcacaaaatgaggttccaaatggaaaagaagtttcttcaaagggtcaaaattatcctaaa
aatacaactaaaacaaaactaaaacagaaattttccgtgaaaccacaaaatggttttaac
aagaaacgtaaaaaaaacgtatttaatccaaagaaagtcactgaagactctgagtatgat
tcaggttctgatgttggcagttctctggatgaggactatagtagtggtgaagaagtgatg
gaggatggctataagggtaaaattcttcacttccttcaagatgcctcaattggtgaactc
actctaattcctcagtgttctcagaaaaaggctcagaagataacagaactccggcccttt
aacagttgggaagctctgttcacaaagatgtccaaaactaatggtttatcagaagatttg
atatggcactgtaaaacattgatccaagaaagagatgtggttataaggcttatgaacaaa
tgtgaagacatttcaaataaattaaccaaacaagtaaccatgctcactggaaatggagga
ggctggaacatcgaacaaccctccattctaaaccaaagtttgtcactcaagccctatcag
aaggttggcttgaattggctggcattagtacataaacatggacttaatggcattttggca
gatgaaatgggcctagggaaaactattcaagccattgcattcctggcatacctctttcag
gagggtaataaaggtcctcatctgatcgttgttccagcatcaactatagataactggtta
agggaagtcaacttgtggtgccccactttaaatgtactctgttactacggttctcaagaa
gaacgtaaacaaatcagatgtaacattcacagtaaatatgaagattacaatgtaattgtg
accacgtataattgtgcaatcagcagttcagatgatcgtagtctgtttcgacgcctaaaa
cttaattacgcaatttttgatgagggccacatgctgaagaatatgggttccatccgctac
cagcaccttatgacaattaatgcaaataaccggttgctgctcacaggcacacctgtgcag
aataatctgttagaactcatgtcactgttgaattttgttatgccacatatgttcagtagt
agtaccagtgaaatacgaagaatgttttcttctaagactaaatctgctgatgagcaaagt
atatatgaaaaggagagaatagcacatgcaaaacaaatcataaagccattcattctcaga
agagtaaaagaagaggttctcaagcagctacctcctaagaaagatcaaattgagttgtgc
acaatgtcagagaagcaggagcaactgtacttgggccttttcaacagattgaaaaaatct
atcaataacctggaaaaaagtacagaaatgtgcaatgtcatgatgcaattgagaaaaatg
gccaatcatcctttattacatcgtcaatattacacagctgaaaaactcaaggaaatgtct
cagcttatgctaaaggaacctacacattgtgaggctaaccctgatctgatctttgaagat
atggaagttatgacagactttgaactacatgtactttgtaaacagtatcgacacataaat
aatttccagttagacatggatttgattctagattctggaaaattccgagttttaggacat
atcttgtctgaattaaaacagaagggtgatagagtggtattattcagccaatttaccatg
atgctggatattttagaggttctcttaaaacatcatcagcataggtacctgagattagat
ggaaagactcaaatttctgaaaggattcatctaattgatgagtttaataccgatatggat
atctttgtgtttctgctgtcaacaaaagctggtggattgggaataaatctgacttcagca
aatgttgttatacttcatgatattgattgtaatccttataatgacaaacaagcagaagat
agatgtcacagagtaggccaaactaaagaagtactagttataaaattaataagccaaggg
acaattgaagaatccatgctaaaaattaaccaacagaaattgaaacttgaacaagatatg
actaccgtagatgaaggtgatgaagggagtatgccagcagatatagccacattactaaaa
acatcaatgggcctgtga
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