Oryctolagus cuniculus (rabbit): 100355434
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Entry
100355434 CDS
T03373
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
ocu
Oryctolagus cuniculus (rabbit)
Pathway
ocu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100355434
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocu03019
]
100355434
Messenger RNA biogenesis [BR:
ocu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100355434
mRNA degradation factors
5'-3' decay
Decapping complex
100355434
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
100355434
NCBI-ProteinID:
XP_002709227
Ensembl:
ENSOCUG00000002156
UniProt:
A0A5F9DHN1
LinkDB
All DBs
Position
1:complement(206171944..206206931)
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AA seq
770 aa
AA seq
DB search
MFRYESLEDCPLDEDEDAFQGLGEEDEEIDQFNDDTFGSGAVDDDWQEAHERLAELEEKL
PAAVNEQTGNGERDEMDLLGDHEENLAERLSKMVIENELEDPAIMRAVQTRPVLQPQPGS
LNSSIWDGSEVLRRIRGPLLGQEMPTVSVLEYALPQRPPQGPEDDRDLSERALPRRSTSP
IIGSPPVRAVPIGTPPKQMAVPSFNQQILCPKPVHVRPPMPPRYPAPYGERMSPNQLCSV
PNSSLLGHPFPPNVPPVLSPLQRAQLLGGAQLQPGRMSPSQFARVPGFVGSPLAAMNPKL
LQGRVGQMLPPAPGFRAFFSAPPPSTPPPQQHPPGPGPHLQTIRSQAPMFRPDTTHLHPQ
HRRLLHQRQQQNRNQHRNLNGAGDRGSHRSSHQDHLRKDPYANLMLQREKDWVSKIQMMQ
LQSTDPYLDDFYYQNYFEKLEKLSAAEEIQGDGPKKERTKLITPQVAKLEHAYKPVQFEG
SLGKLTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRKTLVIIEKTYSLLLDVEDYE
RRYLLSLEEERPALMEERKHKICSMYDNLRGKLPGQERPSDDHFVQIMCIRKGKRMVARI
LPFLSTEQAADILMTTARNLPFLIKKDAQDEVLPCLLSPFSLLLYHLPSVTVTSLLQQLM
NLPQSAPAPAPSNPHLTAVLQNKFGLSLLLILLSRGEDLQNSDPAVESTQNNQWTEVMFM
ATRELLRIPQAALAKPISMPTNLVSLFSRYVDRQKLNLLETKLQLVQGIR
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atgttccgctacgagtctttggaggattgtcctctagatgaagatgaagatgcatttcag
ggcctgggagaagaagatgaagagattgatcaattcaatgatgatacatttggatcaggt
gccgtggatgatgattggcaagaagcacatgagcgcttggctgaattggaagagaagcta
ccagcggcagttaatgaacaaacaggcaatggagaaagggatgagatggacttgttgggt
gaccatgaggagaatctggcagaaaggctcagtaagatggtgattgaaaatgaactagaa
gatccagctatcatgagggcagtgcaaaccaggccagttttgcaaccccaaccaggaagt
ctgaattctagcatctgggatggatctgaagttctgaggcgaatccgaggaccactactt
ggtcaggaaatgcctacagtatctgtgttagaatatgccttgcctcagaggcccccacag
ggcccagaagatgatcgagacctttctgaacgtgcattaccaaggcgatcaacttcacct
atcattgggagtcctcctgtccgagctgtccccataggcaccccacctaagcagatggct
gtacccagcttcaaccaacagattctgtgtccgaagcctgtccatgttcggcccccaatg
ccaccacgttatcctgctccctatggtgagaggatgtctccaaaccagctctgcagtgtc
ccgaattcatccctcctgggtcaccctttccctcctaatgttcctcctgttctcagcccc
ctccaaagagcacagcttcttggaggagcacagctacagcctggacgcatgtctcccagc
cagtttgcacgggtccctggatttgttggtagtccactagctgccatgaatcccaagctg
ctgcaagggcgagttgggcagatgcttcccccagcaccaggcttccgtgccttctttagt
gccccacccccctctacaccacctccacagcagcatcctcctggcccaggacctcatctg
caaaccataagatctcaggccccaatgtttagaccagacacaactcaccttcatcctcag
caccgtcgactcttgcatcagagacagcaacagaacagaaatcagcatcggaatcttaat
ggtgcaggagatagaggaagtcatcggagcagtcatcaggatcatctccgaaaggacccc
tatgccaacctcatgttgcagcgggaaaaggattgggtctccaaaatccagatgatgcag
ctgcaaagcactgatccctacctagatgatttttattatcagaattactttgaaaaactg
gagaagctctcagctgctgaagaaatacaaggtgatggccctaaaaaagaacgcaccaag
cttatcactcctcaggtggccaaactggagcatgcttacaaacctgtgcagtttgagggc
tccttgggaaagcttactgtctctagtgtgaataatcctcgaaaaatgatcgatgctgtt
gtgacatctcggagtgaagatgatgagacaaaagaaaaacaggttcgagacaaaagaaga
aaaacccttgttataattgaaaaaacctatagcttactccttgatgtggaggattatgag
agacgttacctcttaagtctagaagaagagcgacctgccctgatggaggaaagaaagcac
aaaatttgtagcatgtatgacaacttaagggggaaattgcctggacaagagaggccaagt
gatgaccactttgtacagattatgtgtatccgaaaagggaagagaatggttgcccgcatt
cttcccttcctctccacagagcaagcagctgacattctcatgactacagccaggaacctc
cctttccttatcaagaaggatgcacaagatgaggtgctgccctgcttactgagtcccttc
tctctcctcctctatcatctgccatcagtgaccgtcaccagccttctgcagcagctaatg
aacctacctcaaagtgcacctgcaccagcaccctccaaccctcacctcactgctgtgctc
cagaacaagtttggcctatcattgctcctcatccttctgagccgtggggaagacctacag
aattcagaccctgctgtagaatcaacgcagaataaccagtggactgaagtgatgttcatg
gcaacacgagaactcctccggattccccaagcagccctggccaagccgatctctatgccc
acaaacctagtgtccctcttttctcgctatgttgaccggcagaaactgaatttgctggag
acaaaactgcagctagttcaggggatacgataa
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