Oryctolagus cuniculus (rabbit): 100356031
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Entry
100356031 CDS
T03373
Name
(RefSeq) partner and localizer of BRCA2 isoform X1
KO
K10897
partner and localizer of BRCA2
Organism
ocu
Oryctolagus cuniculus (rabbit)
Pathway
ocu03440
Homologous recombination
ocu03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
100356031
03460 Fanconi anemia pathway
100356031
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ocu03400
]
100356031
DNA repair and recombination proteins [BR:
ocu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
100356031
FA (Fanconi anemia) pathway
Downstream FA components
100356031
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PALB2_WD40
Beta-prop_WDR19_1st
Prominin
Motif
Other DBs
NCBI-GeneID:
100356031
NCBI-ProteinID:
XP_008256105
Ensembl:
ENSOCUG00000008461
LinkDB
All DBs
Position
6:complement(14339369..14365683)
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AA seq
1176 aa
AA seq
DB search
MEEPATKPLSSEEKEKLKEKLAFLKREYSKTLARLQRAQRAEKVKNSIKKTIEEQEISQQ
LNHSEPKNKVFPSNKLQINTHLHKETEEKTSVTLGVEPKSFNPGDDTEKVLYTQRTDDIP
EHFPCRVNGPDGEKQQNKLPGKRKKQQKKTFLSQEREYVFDTDSLIPSGKRQKEQEETCS
KNPGSPVTEIRIHLSSPKSEILDSPVPVAETDEVNVSVLPTAKPERDVDPLLRGNKFSKE
ITIPSHSPLNSSNNQHLEQTPLTDNCELITPSLENISPVSPVNLEARGKNKTDFTDNPVS
KAISANSQLPRSPNLQADNSCPKNELSYTNLRENKNHNVEDQSHTEKSLSSSSSTLGGRN
ASLKENEVLSQSKSLSLEAVAPVSTDNQIHSCTMLEGLLFPAEYYVRTTRNMSDCQRKVA
LEAVIQSHLGIRKKEFKNKNKEATNILKLSHEETDQNEIRMSGTCTGSSSGSPSQSLTEV
SSPIGQAEYSKFSRKTVTQPSSRRHKGKRKSVCTPPLDHRELPLPTSSTSGVNRSKDEVT
LYKYQNKNAIVHGKEGHCQKEDSLSPTSNAHLALDDDGFSAPFCKNEMLSLKQLSSFLNV
TDFELPDEDFGSLKLEKLKLCSEKQIEPFQSKLYGEKLLQEGNCFMEELIPKQIDTEMED
VEEEHVLSGQAHPNMANLESQNTKKGLSSSILLFTPLNTVGPDDNDMSTTDMCSPAFPLL
GTTPAFGSQAYCEQVSAEVVGQTFSTSEFSQLKDTGRLDSDSKQCNSSTSTLTLDTSVHV
SGRQGQPACDCHSGPPATPLPSESLTIQENQLCGNICLELHKHSVEQTEVADLPACDDSI
NSHNLQLVSKLKNASGSCSVDVSAMWWERAGVKEPCIITACEYVVALWKPLDAQRWKKNY
TWHFTEVPILQIVPVPDVGNLVCVALGNLEIREIRALLCPCDDNSEKQVLLKSGNIKAVI
GLTKRRLVNCSGALGDQQVEVVTFAEDGGIKEKQFLMPPEETILTFAEVQGMEETLLGTT
VMNNIIIWNLKTGQLLKNMHIDDSYHASVCHKAYSEMGLLFLVLNHPCAKDSESLENPVF
QLIAVNPKTSLNVGVMLYCLPQGQAGRFLEGDVKDHFAAAVLTSGTIAIWDLLLGHCTAL
LPPASHQSWSFVKWSGTDSHLLAGQKDGNIFIYRYV
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atggaagagcctgccaccaaacccctcagcagtgaggagaaggaaaagctgaaggaaaaa
ttagctttcttgaaaagggagtacagcaagacattggctcgccttcagcgtgcccaaaga
gctgaaaaggttaagaattctattaagaaaacaatagaggaacaagaaatctcacagcaa
ttaaaccactcagaacctaaaaacaaagtatttcctagtaacaagttacaaatcaatacc
catctccacaaagaaactgaagaaaagacatctgtcacacttggcgttgagcccaagtcc
tttaaccctggagatgacacagagaaagttttgtatacacaaaggactgatgacatccca
gaacattttccctgcagggtcaatggccctgatggtgagaaacagcagaataagctgcca
gggaaaagaaagaagcagcagaagaaaacatttctttctcaggagagagagtatgtcttt
gacactgattcactcataccgtctggaaaaagacaaaaggaacaggaggaaacctgtagc
aaaaatcctgggtcaccagtaactgaaataagaattcacctttctagtcctaagtctgaa
attcttgattctccagtgccagttgcagaaactgatgaagtgaatgtatcagttctacca
actgcaaagccagaaagggatgttgatccactcttaagaggaaataagttttctaaggag
attacaatcccttcgcacagtccattaaatagcagtaataatcagcaccttgaacaaaca
cctcttacagataactgtgaacttattactccaagcttagaaaacattagccctgtttca
cctgttaacttggaggcacgaggcaaaaacaagactgactttacagataacccagtaagt
aaagctataagtgcaaatagccagctgcctagaagtcctaacttacaggcagataattca
tgtcctaaaaatgaactcagttacactaacttacgagaaaataaaaatcataatgtagaa
gatcagagtcacacagaaaaatctttaagctcttccagtagcactcttggtggtagaaat
gcaagtcttaaggaaaatgaggttctaagtcagtctaagagtctcagcttagaagctgtt
gctcctgtttcaacagacaatcaaatacattcttgcacaatgcttgaaggccttctgttt
cctgcagaatattatgttagaacaacacgaaacatgtcagattgccagaggaaagtagct
ctggaggctgtaattcaaagtcatttagggatcaggaagaaagagtttaaaaacaaaaat
aaggaagcaactaatattttaaagctttcccatgaagaaactgaccaaaatgaaattaga
atgtcaggaacctgcacaggatcaagttcaggaagtccttctcagtcattaactgaggtt
agctctcccattgggcaagctgaatatagtaagttttctaggaagacagttacccaacca
tctagtagaaggcacaaaggaaaaagaaaatcagtctgtaccccaccattggatcatcgt
gaactacctttgccaacttccagcacatcaggtgttaacaggtccaaggacgaggtcacc
ttgtacaaatatcagaacaaaaacgcaattgttcatgggaaggaaggtcattgtcaaaaa
gaggattccctttctcccactagtaatgctcatttagctttggatgatgatggtttcagt
gctccattttgtaagaatgaaatgctaagtttaaagcaactgtcatcttttcttaatgtc
acggactttgagttacctgatgaagactttgggtcccttaagcttgaaaaactgaagctc
tgctcagaaaaacaaattgagccttttcaatcaaaactgtatggagagaagcttcttcaa
gaaggaaattgttttatggaggaactgattcctaaacaaatagatacagaaatggaggat
gtggaagaggaacatgttctatcaggacaagcacaccctaacatggcaaaccttgaaagc
cagaatacaaagaagggcctttcttcatctatactgcttttcactcctttaaatactgtt
ggacctgatgataatgatatgtctaccacagacatgtgttcacctgcttttcccctgcta
ggtactaccccagcttttggctcccaggcatactgtgaacaagtgtctgcagaggttgtc
ggacagactttctccacatccgagttttctcaattgaaagacacaggcagacttgatagt
gatagtaaacaatgcaacagttcaaccagcacactaacactggataccagtgtgcatgtg
tcaggtaggcaaggacaacctgcctgtgactgccactctggccctccagcaacacctctg
cccagtgagtcattgactatccaagaaaatcaactttgtggaaacatatgcttggagttg
cataaacattcggtggaacagacagaagtggcggatcttcctgcttgtgatgatagcata
aactcacataacctacagctggtttcaaagttaaagaatgcttctggttcctgctctgtg
gatgtgagtgccatgtggtgggaaagagctggtgtcaaggagccatgcatcataactgca
tgtgaatacgttgttgctctgtggaaacctctggatgctcagcggtggaagaaaaattat
acctggcacttcacagaggttccaattttacaaatagttcctgtgcctgatgttggtaac
ctagtgtgtgtagctttgggaaatctggaaatcagagaaatcagggcattactttgtccc
tgtgatgataacagtgaaaagcaagtcctactgaaatctggaaacataaaagctgtgatt
ggcctgaccaagaggagactagtcaattgcagtggcgcccttggtgaccaacaggtagaa
gtcgtgacatttgcggaagatggaggaatcaaagaaaaacagtttttgatgccccctgaa
gagactatactaacttttgctgaggtccaagggatggaggaaactctgcttggtaccact
gttatgaacaatattattatttggaatttaaaaactggtcagctcctgaaaaatatgcac
attgatgattcttaccatgcttcagtctgtcacaaagcgtactctgaaatggggctcctg
tttcttgttctgaatcatccttgtgccaaagacagtgagtcgctggaaaaccctgtgttt
cagctgattgcagttaaccctaagacgtccttgaatgtgggagtgatgctgtattgcctt
cctcaagggcaggccggaagattcctggaaggtgatgtgaaagaccattttgcagcagca
gtcttgacctctggaacaatcgccatctgggacctgcttctaggtcattgcactgccctt
cttccacctgcctctcaccaaagttggtcttttgttaaatggtctggtacagattctcat
ttgctggctggacaaaaagatggaaatatatttatatatcgttacgtatga
DBGET
integrated database retrieval system
