Oryctolagus cuniculus (rabbit): 100356195
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Entry
100356195 CDS
T03373
Symbol
SKIC2
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
ocu
Oryctolagus cuniculus (rabbit)
Pathway
ocu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100356195 (SKIC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocu03019
]
100356195 (SKIC2)
Enzymes [BR:
ocu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100356195 (SKIC2)
Messenger RNA biogenesis [BR:
ocu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
100356195 (SKIC2)
mRNA degradation factors
3'-5' decay
Ski complex
100356195 (SKIC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
DUF3516
Motif
Other DBs
NCBI-GeneID:
100356195
NCBI-ProteinID:
XP_002714338
Ensembl:
ENSOCUG00000007019
UniProt:
G1SS77
LinkDB
All DBs
Position
12:complement(134944202..134956962)
Genome browser
AA seq
1246 aa
AA seq
DB search
MMETERLVLPPLDPLDLPLRAVELGCTGRWELLNVRGAPESTLPHGLPPCAPDLLQEAER
LFLSSPAWLPLHGVEYSARKWQRKTDPWSLLAAPGAPVPSDLQAQRHPTTGQILGYKEVL
LENTNLSATTSLSLRRPPGPVSQSLWGNPTQYPFWPGGMDEPTIADLSTREEAEEDIDFE
KDLLTIPPGFKKGVDFAPKDRPAPAPGLLSLSCLLEPLDLGGGDEDESEAVGQPGGPGGD
TAPASSCSAPLARTSSLEELVMKEASTVVSPPEPPKPPPQEQWAIPVDVTSPVGDFYRLI
PQPAFQWAFEPDVFQKQAILHLEQHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTS
PIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWV
IFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVIST
VARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGYYAAVEAKKERMSKHAQTFGAKQ
PMHQGGPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEI
HLFLQRCLARLRGSDRQLPQVLHMSELLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLF
ATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCK
GRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLLRVDALRVEDMMKRSFSEFPSRKDSK
AHEQTLAELSKKLGALEEPDVTGQLADLPEYYSWGEELTETRNVIQRRIMESVNGLKSLS
VGRVVVVKNQEHHNALGVILQVSSNSTSRVFTTLVLCDKPMSEDPQDKGPATADVPHPDD
LVGFKLFLPEGPCDHTVAKLHPGDVAAITTKVLRVNGEKILEDFSRRQQPKFKKDPPLAA
VTTAVQELLRLAQAYPAGPPTLDPVNDLQLKDVSVVEGGLRARKLEELIRGAQCVHSPRF
PAQYLKLRERMQIQKEMERLRFLLSDQSLLLLPEYHQRVEVLRTLGYVDEAGTVKLAGRV
ACAMSSHELLLTELMFDNALSALRPEEIAALLSGLVCQSPGDPGDQLPSTLKQGVERVRS
VAKRIGEVQVACGLNQTVEEFVGELNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCI
QRLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLYTQ
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atgatggagaccgagcggctcgtattgcctcccttagatcccctggacctgccccttcgg
gccgtggaactgggatgcacagggcgttgggaactgctgaacgtgcgtggggctccggag
agcaccctcccccatggcctccctccctgtgccccagatctgctgcaagaagcagagcgc
ttgtttctgtcgtccccggcctggctgcctctgcatggtgtggagtactcggcccgaaaa
tggcagaggaagacggatccttggtctctcctggctgctccgggggccccggtcccatct
gaccttcaggcccaaagacacccaaccacaggccagatcctgggctacaaggaggtcctg
ctggagaatacaaacctctcggccacaacctccttgtctcttcgccggcccccagggcca
gtctcccagtccctgtgggggaatccaacgcagtaccctttctggccaggtgggatggat
gagcccaccatagcagatctgagcactcgagaggaggccgaggaggatatagactttgag
aaagatcttcttaccattccacctggctttaaaaaaggcgtggactttgccccaaaggac
cgcccagctccagcccctgggttgctcagcctcagctgtctgctggagcctctagatttg
ggtggaggtgatgaagatgagagtgaggcagtaggacagccagggggccctgggggggac
actgctccagcctcttcctgcagtgcccccctggcccgaacaagcagcttggaggagctg
gtgatgaaggaagcatccacagttgtatcccccccagagccccccaaacctccacctcag
gaacagtgggccattcctgtggacgtcacctcccctgttggtgatttctaccgcctcatt
cctcagccagccttccagtgggcatttgagccggacgtgtttcagaaacaggcaatcctg
cacttggagcagcacgactctgtctttgtcgcggctcacacgtctgcagggaagacagtc
gtggctgagtacgccattgccctggcccagaaacacatgacacgcaccatctatacctca
cccatcaaggctttgagcaaccagaagttccgggacttccgaaacacgttcggcgacgtg
gggctgctcacgggggacgtgcagctgcacccggaggcttcctgcctcatcatgacgaca
gagatccttcgctccatgctgtacagtggctcggatgtcatccgggacctggagtgggtc
atctttgatgaggttcactatatcaacgatgcagagcgtggggtcgtgtgggaggaggtg
ctcatcatgctccctgaccacgtctctatcatccttctgagcgccaccgtccccaacgcc
ctggagtttgctgactggattgggcgactgaagcgtcgccagatctacgtgatcagcacc
gtggcccggcctgtgcccctggagcactatctgttcacagggaacagccccaagacccag
ggggagctcttcctgttgctggactcccgaggagccttccacacaaaggggtactatgcg
gctgtggaggccaagaaagagagaatgagcaaacatgcccagaccttcggggccaagcag
cccatgcaccaggggggccctgcgcaggaccgcggcgtgtacctgtccctcctggcctcg
ctccgcacgcgtgcccagctgcccgtggtggtgttcaccttctcccggggccgctgtgac
gagcaggcctcgggcctcacctctctcgacctcaccacaagttcggagaagagcgagatt
catctctttctgcagcgctgcctcgctcgccttcgtggctctgaccggcagctaccccag
gtcctacacatgtcggagctcctgcaccgcggcctgggcgtgcaccacagcggcatcctg
cccatcctcaaggagatcgtggagatgctgttcagccgcggcctggtcaaggtcttgttt
gccacggagacctttgccatgggcgtaaacatgcctgcccgcacagtagtgtttgactcc
atgcgcaaacatgatggctccaccttccgggacctgcttcctggggagtacgtgcagatg
gcaggccgggcaggccggaggggcctggacccgacaggcaccgtcatcctgctctgcaag
ggccgagtgcccgagatggcagacctgcaccgcatgatgatggggaagccatcccagctg
cagtcccagttccgtctcacctataccatgatcctcaacctgctgcgggtggacgccctc
agggtggaggacatgatgaagaggagcttctccgagtttccatcccgcaaggacagcaag
gcccatgagcagactctggctgaactgagtaagaagctgggggccttggaggagcccgat
gtgaccggccagctggcagacctgcccgagtattacagctggggagaggaactgacagag
acccggaacgtgatccagcggcgcatcatggagtctgtgaatgggctgaaatcgctctca
gtgggaagggtggtggttgtgaagaatcaggaacatcacaatgcgctgggtgtgatcctg
caggtctcctccaactccaccagcagagtattcacaaccttagtcttgtgtgataagccc
atgtccgaggacccgcaggacaaggggccggccactgccgatgtgccccacccagatgac
ctcgtgggatttaagctgtttctgcctgaagggccctgtgaccacactgtggccaagctc
cacccgggagacgtggctgccatcaccaccaaggtgctccgggtgaatggggagaagatc
ttggaagacttcagcaggaggcagcaaccgaaattcaagaaggatcctccccttgcagct
gtgaccactgctgttcaggaactgctgcgtctggctcaggcttacccagcagggcccccc
accctggaccctgtcaatgatctgcagctcaaggatgtctcagtggtagagggtgggctc
cgggcacggaagctggaggagctgatccggggggctcagtgtgtgcacagcccccgtttc
cctgcccagtacctgaagctgcgggagcgcatgcagatacagaaggagatggagcggcta
cgcttcctgctgtcagaccagtcgctgctgctgctccccgagtaccaccagcgagtagag
gtgctccgaaccctgggttacgtggatgaggcgggcactgtgaagctggcggggcgggtg
gcctgtgccatgagcagccatgaattgctcctcactgagctcatgttcgacaatgccctg
agcgctctgcggccggaggagattgcagccctgctctctggcttggtctgccagagccct
ggggaccctggggatcagctccctagtaccctcaagcagggagtggaacgtgtccggtct
gtagccaagcggatcggtgaagtccaggtggcctgtggcctaaatcagaccgtggaggaa
tttgtgggggagctgaattttggactggtcgaggttgtgtatgagtgggcccggggtatg
cccttctccgagttggcagggctctctgggacccccgagggcctggtggtccgctgtatc
cagcgcctggctgagatgtgtcgctcactgcggggggcagcccgcctggtaggggagcct
gtgctaggcgctaagatggagacagcagccacactgcttcggcgggacatcgtctttgca
gccagcctctatacccaatga
DBGET
integrated database retrieval system
