Oryctolagus cuniculus (rabbit): 100356412
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Entry
100356412 CDS
T03373
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
ocu
Oryctolagus cuniculus (rabbit)
Pathway
ocu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100356412
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocu03019
]
100356412
03036 Chromosome and associated proteins [BR:
ocu03036
]
100356412
Enzymes [BR:
ocu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100356412
Messenger RNA biogenesis [BR:
ocu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
100356412
mRNA degradation factors
5'-3' decay
Decapping complex
100356412
Chromosome and associated proteins [BR:
ocu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
100356412
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
100356412
NCBI-ProteinID:
XP_002722747
Ensembl:
ENSOCUG00000005849
UniProt:
G1SPT2
LinkDB
All DBs
Position
Unknown
AA seq
483 aa
AA seq
DB search
MSTARTENPVIMGLSSQNGQLRGPVKPSGGPGGGGTQTQQQMNQLKTTNTINNGTQQQAQ
SLTTTIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPS
PIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQV
SQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHV
QMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINL
MEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYS
CFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLH
RIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPVED
EKP
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgagcacggccagaacagagaaccctgttataatgggtctgtccagtcagaatggtcag
ctgaggggccctgtgaagcccagtggtggccctggaggagggggcacacagacacagcaa
cagatgaaccagctgaaaaccaccaacacaatcaataatggcactcagcagcaagcacag
agtttgaccaccactattaaacctggtgacgactggaaaaagactttaaaactccctcca
aaggatctaagaatcaagacttcggatgtgacctccacgaaaggaaatgagtttgaagat
tattgtttgaaacgggagttattgatgggaatttttgaaatgggctgggaaaagccatct
cctattcaggaggagagcattcccattgctttatctggtagggatatcttagctagagca
aaaaatggaacaggcaagagcggtgcctacctcattcccttacttgaacggctagacctg
aagaaggacaatatacaagcaatggtgattgttcccactagagaacttgctctacaggtc
agtcaaatttgcatccaggtcagcaaacacatgggaggggccaaagtgatggcaaccaca
ggaggaaccaatttacgggatgacataatgaggcttgacgacacagtgcacgtggtgatt
gctacccctgggagaatcctggatcttatcaagaaaggagtagcaaaggttgatcatgtc
cagatgatagtactggatgaggcagataagttgctgtcacaggattttgtgcagataatg
gaggatattattctcacgctacctaaaaacaggcagattttactatattccgctacgttc
cctcttagtgtacaaaaattcatgaattcccatttacagaaaccctatgagattaacctg
atggaggaactaactctgaagggagtaacccagtactacgcatatgtaactgagcgccaa
aaagtacactgcctcaacacacttttctccaggcttcagataaaccagtcaatcattttc
tgtaattcctctcagagagttgaattgctagccaagaagatttctcaactgggttattct
tgcttctatattcatgctaaaatgaggcaggaacatagaaatcgtgtatttcatgatttc
cgaaatggcttatgccgcaatcttgtttgcactgatctttttacccgaggtattgatata
caagctgtgaatgtggtaataaactttgactttccaaagctagcagagacctatcttcat
cgtattggaagatcaggtcgctttggtcatcttggcttagccatcaatttgatcacatat
gatgatcgtttcaatctgaaaagtattgaggagcagctgggaacagaaattaaacctatc
ccaagcaacattgacaagagcctgtatgtggcagaataccacagcgagcctgtagaagac
gagaaaccttaa
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