Oryctolagus cuniculus (rabbit): 100357330
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Entry
100357330 CDS
T03373
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1 isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
ocu
Oryctolagus cuniculus (rabbit)
Pathway
ocu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100357330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocu03019
]
100357330
Enzymes [BR:
ocu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
100357330
Messenger RNA biogenesis [BR:
ocu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
100357330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
100357330
NCBI-ProteinID:
XP_002715010
Ensembl:
ENSOCUG00000013867
UniProt:
G1T6A2
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All DBs
Position
12:complement(6316296..6333575)
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AA seq
531 aa
AA seq
DB search
MDVGADEFEQNLPLLQELVLGADFVGLDIEFTGLRSSLSEPHQISLFDLPSEWYLKTRRS
VQQFTICQIGLSVFSTIEGESNKYVAHSCNFFLFPTTFGILDSEFSFQASSVQFLNQYGF
NYNKFLKKGIPYMNEEQEKKIKQNILAGDWRVRSSLDKDQIKVVIDEVTRWLDPAEEGDS
ITLPGIAGFQAFEVQLVLRQALPNIWTAQREQGVVVKKVSRQHRWYLEHTSCDRASCWKE
KILLSARGFSVFFQMLVRAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKQNIHSLFPV
LIDTKNVTKDIWKELNFPRVSNLSEVYEVLNSNLNPTKNSGPEIIHANKCEKYVDTKCPH
EAAYDAFLCGSVLLKVAHLLLQRAHSNSPATEPSFPQYLDMLAPYVNQVNLIRAGVPKVN
FSGPDYPSFRPPVLILSVARWPGVSEQQVYREFQNLCKFDVRRLTRSQFLLLTNKFKDAR
NVLKEYRGHPSLQVSLYRYWRHAPDVKCLLQVCGIVTTWALLAFFLGRPSP
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atggacgtgggcgccgacgagttcgagcagaacctgcccctgctccaggagctggtcctg
ggcgccgacttcgtgggtctggacatcgagttcaccggccttcggtccagcctgtctgaa
ccccatcagataagcctctttgatctgccgtccgagtggtacctgaagacccggcgcagt
gtgcagcagttcacaatctgtcagattgggctgtccgtgttctccacgatcgaaggggag
tcgaacaagtacgtagcccattcgtgcaacttctttctctttcctacaacatttgggatt
ttggactcggaattctctttccaggcctccagtgttcagtttttgaatcagtatggcttc
aactataacaagtttctcaaaaagggaatcccgtacatgaatgaagaacaggagaagaaa
atcaagcagaacatcctggctggagactggcgggtgcgcagctccctggataaagaccag
atcaaggtggtgatcgacgaggtgacgcggtggctggacccggccgaggaaggcgactcg
ataacgctgcctgggattgctgggttccaggccttcgaagtccagctggtgctgaggcag
gccctccccaacatctggacagcgcagagagagcagggggtggtcgtgaagaaggtgagc
aggcagcatcgctggtacctggagcacacgtcctgtgaccgggcgagctgctggaaggag
aagattctgctctcggccaggggtttctccgtcttcttccagatgctggtgagagcccag
aagcccttggtggggcataacatgatgatggacctgctgcacctgcacgagaagttcttc
aggcccctcccagaaagctacgatcagtttaagcagaatatccacagcctgtttcctgtt
ctcatcgacaccaagaatgtgacgaaggacatctggaaggaactgaatttcccgagggtc
tcaaatctttccgaagtgtacgaggtcttgaacagtaacttgaatcccaccaagaattcc
ggaccagagatcattcacgcgaacaagtgtgaaaaatacgtggacaccaagtgcccccac
gaggccgcatacgacgccttcctctgtgggtcagttcttttgaaagtggcgcacctgctc
ctgcagagggcgcacagcaacagccctgctaccgagccctcgttccctcagtacctcgac
atgctggccccctacgtgaaccaagtgaatctcatccgcgctggggtccccaaagttaac
ttctctggcccggactaccccagtttccggccccccgtgctcatcctcagcgttgcgcgg
tggcccggggtcagcgagcagcaggtctatcgtgagttccagaacctctgcaagttcgac
gtccggcgactcacgcgaagccagttcttgctcctgaccaataagtttaaggacgcccgg
aacgtcctcaaggaatacaggggccacccgagcctgcaggtctccctctaccgctactgg
aggcacgcccccgacgtcaagtgcctgctgcaggtctgtggcatcgtcaccacctgggcc
ctgctggcattcttcctgggaagacccagcccctga
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