Oryctolagus cuniculus (rabbit): 100357900
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Entry
100357900 CDS
T03373
Name
(RefSeq) collagen alpha-4(IV) chain isoform X2
KO
K06237
collagen type IV alpha
Organism
ocu
Oryctolagus cuniculus (rabbit)
Pathway
ocu04151
PI3K-Akt signaling pathway
ocu04382
Cornified envelope formation
ocu04510
Focal adhesion
ocu04512
ECM-receptor interaction
ocu04820
Cytoskeleton in muscle cells
ocu04926
Relaxin signaling pathway
ocu04933
AGE-RAGE signaling pathway in diabetic complications
ocu04974
Protein digestion and absorption
ocu05146
Amoebiasis
ocu05165
Human papillomavirus infection
ocu05200
Pathways in cancer
ocu05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
100357900
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100357900
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100357900
09142 Cell motility
04820 Cytoskeleton in muscle cells
100357900
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
100357900
09154 Digestive system
04974 Protein digestion and absorption
100357900
09158 Development and regeneration
04382 Cornified envelope formation
100357900
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
100357900
09162 Cancer: specific types
05222 Small cell lung cancer
100357900
09172 Infectious disease: viral
05165 Human papillomavirus infection
100357900
09174 Infectious disease: parasitic
05146 Amoebiasis
100357900
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
100357900
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ocu04147
]
100357900
00536 Glycosaminoglycan binding proteins [BR:
ocu00536
]
100357900
Exosome [BR:
ocu04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
100357900
Glycosaminoglycan binding proteins [BR:
ocu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100357900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
100357900
NCBI-ProteinID:
XP_017198658
Ensembl:
ENSOCUG00000007286
LinkDB
All DBs
Position
7:4729135..4910765
Genome browser
AA seq
1679 aa
AA seq
DB search
MRCCSRCTSYSWSLILILFSIQHVYGSGKKYAAPCGGRDCSVCQCFPEKGSRGQPGPLGP
QGPIGPLGPPGPIGIPGEKGMRGDSGLPGAAGDKGDKGPTGVPGFPGLDGIPGHPGPPGP
RGKPGRDGYNGSRGEPGLPGERGAPGSGGLPGLPGQSGEKGNSLFISRGIKGIQGDRGDP
GPHGLPGSRGARGPAGPMGYSGAPGLMGPPGSPGSPGLKGNPGVGVKGQMGDPGEVGQQG
SPGPTLLVEPPDFSLYKGEKGLKGIPGMIGLPGPPGPKGKPGVGAKGEKGIPGFPGPRGD
PGSYGSPGFPGLKGERGLVGAPGQFGFLGPKGDPGDRGRPGPPGILATPSLPLKGPPGDP
GFPGRFGEMGAFGPPGLPGPPGRPGEACAGMMGPPGPQGSPGSPGLPGAAGIPGRPDSAP
GIPGKPGSPGLPGAPGLQGPPGSDVVYCRVGRPGPHGIKGNVGPPGGRGLKGEKGDEGLC
ACRHCPGGPPGPPGSPGRHGSKGDLGPPGWLGEKGDPGPPGAEGSPGTPGKPGASGPPGN
KGAKGNMVVPRVKGHKGDRGPDGPPGFPGQHGPHGWDGLGGEKGDPGPPGDHEDAVPGGK
GFPGPPGPPGEAGVMGPPGMGFPGSSGERGQPGAPGHPGMRGPDGLKGQKGDTILCNITY
PGRPGLPGFDGPPGLKGFPGFPGAPGPRCLDGQKGRRGPPGRSEIPGPPGFRGDVGDPGF
GGEKGSSPDGPPGPPGPSGMNGQKGIPGDSAFGHPGPPGIRGLPGEPGTKGPKGHPGHSG
AEGAAGLPGLPGLKGPKGREGRTGFPGVPGIPGHSCERGTPGIPGQPGLPGAPGSPGVPG
WKGPQGDMGPLGPAGMKGLPGLPGRPGADGPPGSPGIPGPLGEDGLPGFPGPKGLQGLPG
FRGFPGERGRPGPEGPPGRKGEIGEKGLPGGLGYQGARGAKGMRGPPGDEGEVGIFSEKG
RPGEPGLRGDGGFPGERGDKGSPGMQGRRGEPGRHGPPGFHRGEPGRNGQPGLPGPPGPP
GSPGPRGIIGFPGFPGDQGEPGSPGPPGFSGLDGARGPKGNKGDAASQFGPPGPKGEPGS
RGYQGHFGGPGEQGFPGVQGHRGPPGRPGSPGSSGPPGCPGGQGIPGLEGHPGEVGDPGP
RGLLGDPGRPGPPGMKGPSGSPGLDGLHGLKGQKGTKGASGLHEMGPPGPMGIPGIKGDK
GEPGSPGISPPGLFGERGPPGLPGRPGPVGPMGATGRAPKGDIPDPGPPGDQGLPGPDGP
RGAPGPAGPPGSVDLLKGEPGDCGVPGPPGPPGPPGPPGCQGVPGCDGHDGQKGPMGFPG
LQGPHGLPGLPGEKGLPGSPGRKGPTGPPGYRGEPGPPADEDSCPRIPGLPGVPGPRGPE
GAMGFPGQRGPPGQGCKGEPGLDGKRGRDGVPGAPGPPGHKGDTGEAGRPGAPGPPGPTG
DPGPKGLGPGYLSGFLLVLHSQTDQEPACPMGMPRLWTGYSLLYLEGQEKAHNQDLGLAG
SCLPIFSTLPFAYCNIHQVCHYAQRNDKSYWLASAAPLPMMPLSEEEIRPYISRCAVCEA
PAQAVAVHSQDQSIPPCPRAWRSLWIGYSFLMHTGAGDQGGGQALMSPGSCLEDFRAAPF
LECQGRQGTCHFFANEYSFWLTTVPPDLQVFSAPSPDTLKESQAQRQKISRCQVCVKYS
NT seq
5040 nt
NT seq
+upstream
nt +downstream
nt
atgaggtgctgttccagatgcacctcatattcctggtcactgatacttatcctcttttct
atacaacatgtctatgggagtggaaagaaatatgctgctccttgtggagggagagattgc
tctgtctgccagtgctttcctgaaaaggggtctcggggtcagccaggaccactaggacca
caaggtccaataggacccctgggaccccctgggcccattgggattccaggagagaaagga
atgagaggcgacagtggccttcctggagcagcaggggacaaaggagataagggcccaact
ggtgttcctggatttccaggtttggatggcatacctgggcacccagggcctcctgggccc
agaggcaaacctggcagagatggctacaatggctcaagaggtgaaccagggttgccagga
gaaagaggagctcctggctcaggaggccttccaggccttcctgggcaaagtggagaaaaa
ggaaattcactgttcatttctcgtggaattaaaggcattcagggagaccgaggggatcca
ggaccacacggcttaccaggatctaggggtgcaagaggacctgcaggtcccatgggatat
tccggagctccagggttaatgggacctcctggcagtcctgggagcccgggtttgaaggga
aatcctggtgtgggagtgaagggacagatgggagacccgggtgaggttggccagcaaggt
tcgcctggacccaccctactggtagagccacccgactttagtctctataaaggagaaaag
ggtttaaaaggaattcctggaatgattggactgccaggacccccaggacccaagggcaaa
cctggcgttggggcaaaaggagagaaaggtattcctggattcccaggacctcggggtgac
ccgggttcctatggatctccaggtttcccaggactgaagggagaacgaggcctggttgga
gcacctgggcagtttggatttcttggccctaagggagatcctggagaccgcgggcgcccg
ggaccaccaggcattttggcaactccatctcttccactcaaaggtcctcctggggaccct
gggttccctggccgctttggcgagatgggggcctttggaccacctggcctcccaggtcca
ccaggcagacctggggaagcctgtgcaggcatgatgggaccccctggaccacaggggtct
cctggttctccaggccttccaggggcagctggcattcctgggagacctgattctgctccc
ggaataccagggaagccaggatcacccggccttcctggagcaccaggactgcaaggcccc
ccaggatcagacgtggtatattgtcgtgttgggcgcccgggaccacatggaataaagggc
aatgtgggtcctccaggaggaagaggcttaaaaggagaaaaaggagacgaaggactctgt
gcctgcaggcattgtcctgggggcccccctgggcctccaggatctcctgggaggcatggc
agtaagggggacttgggaccccctggttggcttggagaaaaaggtgatccaggccctcct
ggtgctgaaggatctccagggacaccaggaaaacctggtgcctctggaccacctggcaac
aaaggagcaaagggtaacatggttgtaccaagagttaaagggcacaagggagacagagga
cctgatgggccaccaggatttcctgggcagcatggaccacatggttgggatggacttggt
ggagaaaagggggatccaggacccccaggggatcatgaagatgcagtcccaggtggtaaa
gggtttcctggacctccaggcccccctggggaagcaggagtcatggggcctcctggcatg
ggatttcctggttcatcgggagagagaggtcaaccaggagctccaggccacccaggcatg
aggggtcctgatggcttgaaaggtcagaaaggtgacacaattctttgtaatataacctac
cccggtaggccaggccttcccggatttgatggacctccaggtctgaaagggttcccaggg
ttccctggtgctcctgggccgagatgcttggatggacagaaaggccggcgtggccctcca
ggaaggtcagaaataccaggtccacccggttttcgtggtgatgtgggagatccaggtttt
ggaggtgaaaaggggtcctctcctgatgggcccccaggccctccagggccatctggcatg
aatggtcagaaaggaatcccaggagactctgcgtttggtcacccaggccccccaggaatc
aggggtcttccaggagagccagggactaaaggacccaaaggtcatccaggacattccggg
gctgaaggggcagctggccttccaggattgccggggctcaagggtcccaaaggcagagaa
ggtagaactggatttccaggggtcccaggaatacctggccattcctgtgaaagaggcact
ccagggattccaggacaaccaggtctccccggtgctccaggcagtccaggtgtcccaggt
tggaaagggccacaaggagatatgggacctcttggaccagctggaatgaagggcctccct
ggactcccaggacggccaggggcagatggacccccaggctccccaggaatcccaggccct
ttgggggaagatggactacctggctttccaggtccaaaaggactccaggggctgcctggt
tttagaggttttcctggagaaagaggaaggccaggaccagagggaccaccaggcagaaag
ggagaaattggagagaagggtttacctggtggtctgggatatcagggcgcaagaggtgct
aaaggcatgagaggacctcctggagatgaaggagaagtgggtatcttttctgagaagggg
agacctggggaacctggactgcgtggagatggtggattcccaggagaaagaggtgataaa
ggaagtcctgggatgcaaggaagaagaggagaaccaggaagacatggacctcctggattc
cacagaggggagcctggcagaaatggacaaccagggttgcctggtccccctggcccgcca
ggctcaccagggccaagaggaatcattggttttccaggatttccaggagaccagggtgag
ccaggttccccaggtcctcctggattttcaggactcgatggtgcaagaggacctaaagga
aacaaaggtgatgctgccagtcagtttgggccacctggcccaaagggtgagccaggtagc
cgtggatatcaaggacattttggaggccccggagagcagggttttcctggtgttcaaggg
cacagaggaccacctggaaggccaggatcacctggctcctctggaccaccagggtgtcca
ggtggccaggggatacctgggctggagggccatccgggagaagtgggggaccctgggcca
agaggcctcctgggagatccagggagaccaggtcccccaggaatgaaaggtccttctggt
tctcctggcctggatggcttgcatgggctgaagggtcagaaaggaaccaaaggtgcttca
ggtttgcatgaaatgggcccacctggtccaatgggaatacctggaatcaaaggggataaa
ggagaacctgggagcccaggaatttctcctccaggactttttggtgaacgaggtccccca
ggcctcccagggagaccaggaccagttggtcccatgggtgccacaggaagagctcctaag
ggtgacattcctgacccaggtcctcctggagatcagggacttcctggtcctgatggccca
agaggagcacctgggcctgcaggcccccctgggagtgtggatcttctgaaaggagagcca
ggtgactgtggtgtgccagggccgccaggaccccccggcccgccaggccctccggggtgc
caaggtgttccaggatgtgatggacatgatggccagaaaggaccaatggggttcccaggg
ctgcaagggccccatggccttcctgggctacctggagagaagggtttacctggatctcca
ggtagaaaaggacccacgggtcctccaggttacagaggtgaacctgggccacctgcggat
gaagattcttgtccccgaatcccagggctccctggggtgcccggcccaagagggccagaa
ggagccatgggattccctggacagagaggacccccaggtcaagggtgcaaaggagagcct
ggactggacggcaagaggggcagggatggagtccctggggctcctgggcctcctggacac
aaaggtgacactggagaagccggccgccctggagcaccaggcccccctggtcctactggg
gaccctggccccaaagggcttggccctggttacctcagtggcttcctcctcgtcctccac
agtcagacagaccaagaacctgcctgtcccatgggcatgcccaggctctggactgggtat
agcctcttgtacctggaaggacaagagaaggctcacaaccaagaccttggtctggctggg
tcttgccttcccatatttagcacgctgccctttgcctactgcaacatccaccaagtgtgc
cactacgcccagagaaacgacaaatcctactggctggccagcgctgcccccttacccatg
atgccgctctcagaggaggagatccgcccatatatcagccgctgtgccgtgtgtgaggcc
ccggcacaggcggtggcggtacacagccaggaccagtctatccccccatgcccgcgagcc
tggaggagcctctggattggctactccttcctcatgcacacaggagctggggaccaagga
ggagggcaggccctcatgtctcctggaagctgcctggaagacttcagagcggcaccattc
ctcgaatgccaaggccgacagggcacgtgccacttctttgcaaatgagtatagcttctgg
ctgacaacggtaccaccagacttgcaagttttctctgccccatcaccagacaccttaaaa
gaaagccaggcccagcgccagaaaatcagcaggtgccaggtctgcgtgaaatacagctag
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