Oryctolagus cuniculus (rabbit): 103346860
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Entry
103346860 CDS
T03373
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
ocu
Oryctolagus cuniculus (rabbit)
Pathway
ocu04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
103346860
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ocu04147
]
103346860
00535 Proteoglycans [BR:
ocu00535
]
103346860
00536 Glycosaminoglycan binding proteins [BR:
ocu00536
]
103346860
Exosome [BR:
ocu04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
103346860
Proteoglycans [BR:
ocu00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
103346860
Glycosaminoglycan binding proteins [BR:
ocu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
103346860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
103346860
NCBI-ProteinID:
XP_051696103
Ensembl:
ENSOCUG00000024772
LinkDB
All DBs
Position
Unknown
AA seq
1348 aa
AA seq
DB search
MAPRRGRGAGEDARRPHLSPGARRWLWLRPRRRLLDVLAALVLLLGAGAASAEPEGSGDE
VGLLQLLGEPPPQQVTEVEDPAVGLAYVFGPDANSGQAAQYHFPSPFFRDFLLLFRVRPA
TERAGVLFAITDPAQAVVTLGVKVSEVRDGHQLISLLYTEPGARHTHTAASFRLPAFVGQ
WLRFALSVDGGHVTLYVDCEEFQRVPFTRSAQGLRLEPGSGLFVAQAGGADPDKFQGSIA
ELRVRGDPQLSTLHCLDEDDDDDGGASGDFGSGLEENRQLAGEETGAPRTPSLPEQPPVT
SPPLAGGSSIEDSRTEETEEETTVASLGAQPLPGSDVASAGEEDVQSPGGPLAKGGQKGQ
KGEPGARGLPGPAGPQGPAGPAVQGPEALPVPGAQGPPGPPGPPGKDGAPGRDGEPGDPG
EDGKPGEAGPQGFPGTPGDVGPKGEKGDPGVGPRGPPGPQGPPGPPGPPFRHDKLTFIDM
EGSGFGGDPETLRGPRGFPGPPGPPGVPGLPGEPGRFGLNSSHAPGPAGLPGVPGRDGPP
GVPGPQGPPGTPGKDGQPGPAGQKGSPGDVGAPGPKGSKGDPGPVGFPGESGVAGAPGPA
GPQGPPGPPGPPGPPGPGLAAGFEDMEGSGGPFWPTARGTERLQGPPGPPGLKGDPGTAG
TPGAKGEVGADGAPGFPGLPGREGAAGPPGPKGEKGSQGEKGDPGKDGVGQPGLPGPPGP
PGPVVYVSQQDGAVVSGPGPEGRPGFAGFPGPAGPKGDLGSKGEQGLPGPKGEKGEPGSI
VSPDGRALAPAQKGAKGEPGFRGPPGPYGRPGHKGEIGFPGRPGRPGMNGLKGEKGEPGD
VSHGLGMRGMPGPPGPPGPPGPPGTPVYDSNAFVESGRPGPPGLPGLQGPSGPKGDKGEV
GPPGPAGQFPFDLLRLGAEMKGEKGDRGDAGQKGERGDPGTGGFFGSSVPGPPGPPGPPG
YPGIPGPKGDSIRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPSSFPGPHRHTVSIPGP
PGPPGPPGPPGTLGASSGVRVWATYQTLLDKVHEVPEGWLLFVAEREELYVRVRSGFRKV
LLEARTPLPRGTDNEVAALQPPVVQLQEGNPYPRREHSYSTVRPWRADDILANPPRLLDP
KPYPGAPHHGAYTHLQPAHPTPLPVHLHQDFRPVLHLVALNSPLSGGMRGIRGADFQCFQ
QARAVGLAGTFRAFLSSRLQDLYSIVRRADRGALPVVNLKDEELSPSWEALFSGTQGQLR
PGARIFSFDGRDILRHPAWPQKSVWHGSDPSGRRLTNSYCETWRTEAPTATGQASSLLAG
RLLEQTAASCHHAYAVLCIENSFVTSSK
NT seq
4047 nt
NT seq
+upstream
nt +downstream
nt
atggcgccgaggcgcggccgcggggccggcgaggacgcacggcgccctcacctgtcgccc
ggcgcccgcaggtggctctggctgcgaccgcggcggcggctgctggacgtgctggccgcc
ctggtcctgctgcttggggccggcgcggcttcggcggagccagagggctccggcgacgag
gtcgggctgctgcagctcctcggcgagcccccgccccagcaggtgacggaggtggaggac
cccgccgtcgggctggcctacgtcttcgggccggacgccaacagcggccaggcggcccag
taccacttccccagccccttcttccgggacttcttgctgctgttccgcgtccggccggcc
acggagcgcgccggggtgctgttcgccatcacggacccggcgcaggccgtggtcacgctg
ggcgtgaaggtctcggaggtgcgggacgggcaccagctcatctcgctgctctacacggag
ccgggcgcccgccacacccacacggccgccagcttccgcctgcccgccttcgtcggccag
tggctgcgcttcgcactcagcgtggacggcggccacgtgacgctctacgtggactgcgag
gagttccagagggtgccgttcacgcgctctgcacagggcctgcggctggagcctggctct
ggcctctttgtggctcaggccggaggagccgaccctgacaagttccagggcagcatcgcg
gagctgagggtgcgtggggacccgcagctgagcaccctgcactgcctggacgaggacgac
gatgacgatggcggggcttccggagacttcgggagtggactggaggagaaccgacagctg
gccggggaggagacgggcgcaccccgaacacccagcctccctgagcagcccccggtcact
tctcctcccttggctggaggcagcagcatagaagattccagaactgaagaaactgaggaa
gaaaccacggtggcctccttaggagctcagccccttcctggctcagatgtggcttccgcg
ggagaggaggatgtccagagccccgggggacccctggcaaagggaggccagaaggggcag
aagggggagccgggagcccggggcctgcctggcccagccgggcctcagggtcccgcaggc
ccagcggttcagggaccggaggcactgccagttccgggggcacaggggccgcctgggcct
ccaggtccgccagggaaggatggtgccccaggaagggacggtgagccgggcgaccctggt
gaagatggaaaacccggtgaagctgggccccaaggcttccccgggaccccaggagacgtg
ggccccaagggtgagaagggggaccctggggtcgggccaagaggacccccagggcctcag
gggcctccggggccaccaggaccccccttcagacacgacaagctgaccttcatcgacatg
gagggatccggcttcgggggtgacccagagaccctcagaggcccgcgtggcttccccggg
ccccccggccccccgggtgtcccaggcctgccgggtgagccgggccgcttcggcctgaac
agctcgcacgcgccagggcctgccggtctccctggagtgcctgggcgggatgggcccccc
ggcgttcccggcccccagggccccccaggcaccccaggaaaagacgggcagccaggaccg
gcgggacagaaaggcagccccggtgacgtgggcgccccaggacccaagggaagcaagggg
gaccctggccccgtgggcttccccggcgagagtggcgtagcaggagcccctgggccagct
ggaccccaaggacctcccgggcccccgggcccccccgggccaccaggaccaggacttgct
gctggatttgaggacatggaaggctcggggggacccttttggccgacggcccgaggcact
gaaaggctgcagggaccacctggacccccaggactcaagggggaccctggaacggctggg
acacctggagccaagggagaagttggagctgacggagcccccggcttcccaggccttcct
gggagagagggtgctgctgggcccccgggacccaaaggagaaaaggggagtcaaggagaa
aaaggagacccagggaaggacggagtggggcagcccggcctgcccgggccccctggaccc
ccggggcctgtggtctacgtgtcgcagcaagatggagcagtggtgagcgggccgggaccg
gagggccgcccaggctttgcaggcttccctggacctgctgggccgaaaggtgacctgggc
tccaaaggcgagcaaggcctcccgggacccaagggtgagaagggggaacccggcagcatc
gtcagccctgatggccgagctctggcccccgcccagaaaggagccaagggcgagccgggc
ttccgaggacccccgggcccgtacggacgtcctgggcacaagggcgagatcggcttccct
gggcggccgggccgccccgggatgaatggattgaaaggagagaagggggagccgggggac
gtcagccatggacttggcatgaggggaatgcccggccccccagggcccccagggccccca
ggcccccccgggacacccgtctatgacagcaacgcgtttgttgagtctggtcgccccggg
cccccaggactgccagggctccagggaccttcgggaccaaagggtgacaaaggagaagta
ggccccccgggaccagcagggcagttcccgttcgacctcctccgcctgggggctgagatg
aagggcgagaagggggaccgaggggacgctggacagaaaggcgagaggggcgaccctggg
accggcggcttctttggctccagcgtgcccggccctcctggtccccccggcccaccgggc
taccccgggattccgggtcccaagggggatagcattcggggccagcccggcccccctgga
ccgcagggaccccctggcatcggctacgaggggcgccagggccctcctgggcccccggga
ccgcccgggccctcctcattccctggccctcacaggcacactgtcagcattcctggccca
ccaggcccacccggtcccccaggacccccgggaaccctgggcgcctcctcaggcgtgagg
gtctgggccacctaccagaccctgctggacaaggtgcacgaggtgcccgagggctggctc
ctcttcgtggccgagagggaggagctgtacgtccgcgtccgcagcgggttccggaaggtg
ctgctggaggcccggacgcctctcccgcgagggacggacaacgaagtggctgccctgcag
ccccccgtggtacagctgcaggagggcaacccctacccccgtcgggagcactcctactcc
actgtgcggccctggcgggcagatgacatcctggccaaccccccacgcctgctggacccc
aagccctaccccggggccccacaccacggcgcctacacacacctccagcccgcccacccc
acgcccttgcccgtgcacctccaccaggacttccggccggtgctccacctggtggcgctc
aacagccccctgtcgggcggcatgcggggcatccgcggggccgacttccagtgcttccag
caggcgcgggccgtggggctggccggcaccttccgcgccttcctgtcctcgcgcctgcag
gacctgtacagcattgtgcgccgtgccgaccgcggggcgctgcccgtggtcaacctcaag
gacgaggagctgtcccccagctgggaggccctgttctcaggcacccagggccagctgagg
ccgggagcccgcatcttctcctttgacggcagggacatcctgcggcacccagcctggccc
cagaagagcgtgtggcatggctcggaccccagcgggcgcaggctgaccaacagctactgc
gagacgtggcggacagaagcgccgacggccacaggccaggcctcgtcgctgctggcgggc
agactgctggagcagacggccgcgagctgccaccacgcctacgccgtcctctgcatcgag
aacagcttcgtgacctcctccaagtag
DBGET
integrated database retrieval system
