Oryctolagus cuniculus (rabbit): 103347362
Help
Entry
103347362 CDS
T03373
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
ocu
Oryctolagus cuniculus (rabbit)
Pathway
ocu04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
103347362
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ocu04147
]
103347362
00535 Proteoglycans [BR:
ocu00535
]
103347362
00536 Glycosaminoglycan binding proteins [BR:
ocu00536
]
103347362
Exosome [BR:
ocu04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
103347362
Proteoglycans [BR:
ocu00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
103347362
Glycosaminoglycan binding proteins [BR:
ocu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
103347362
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Fz
Collagen_trimer
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
103347362
NCBI-ProteinID:
XP_051695943
LinkDB
All DBs
Position
Unknown
AA seq
1504 aa
AA seq
DB search
MAATPHRQHRLPPGHNLVPLLLPLVTGALGAHAAPSALTSDPLAPRSHVPAAAFLGDGGA
WVFRVVHPAGQDSSSPANDSALLGASPRGPPARCLPLPASLPVCSRLGIGHAWLPNHLRH
EHGEEVQAAAQVWGRLLQTRCHPFLAWFFCLLLAPPCGLGRPPGPPPCRQFCEALEDACW
SCLDGGQLPVACASLPAQEDGYCVFIGPAAEGSGDEVGLLQLLGEPPPQQVTEVEDPAVG
LAYVFGPDANSGQAAQYHFPSPFFRDFLLLFRVRPATERAGVLFAITDPAQAVVTLGVKV
SEVRDGHQLISLLYTEPGARHTHTAASFRLPAFVGQWLRFALSVDGGHVTLYVDCEEFQR
VPFTRSAQGLRLEPGSGLFVAQAGGADPDKFQGSIAELRVRGDPQLSTLHCLDEDDDDDG
GASGDFGSGLEENRQLAGEETGAPRTPSLPEQPPVTSPPLAGGSSIEDSRTEETEEETTV
ASLGAQPLPGSDVASAGEEDVQSPGGPLAKGGQKGQKGEPGARGLPGPAGPQGPAGPAVQ
GPEALPVPGAQGPPGPPGPPGKDGAPGRDGEPGDPGEDGKPGEAGPQGFPGTPGDVGPKG
EKGDPGVGPRGPPGPQGPPGPPGPPFRHDKLTFIDMEGSGFGGDPETLRGPRGFPGPPGP
PGVPGLPGEPGRFGLNSSHAPGPAGLPGVPGRDGPPGVPGPQGPPGTPGKDGQPGPAGQK
GSPGDVGAPGPKGSKGDPGPVGFPGESGVAGAPGPAGPQGPPGPPGPPGPPGPGLAAGFE
DMEGSGGPFWPTARGTERLQGPPGPPGLKGDPGTAGTPGAKGEVGADGAPGFPGLPGREG
AAGPPGPKGEKGSQGEKGDPGKDGVGQPGLPGPPGPPGPVVYVSQQDGAVVSGPGPEGRP
GFAGFPGPAGPKGDLGSKGEQGLPGPKGEKGEPGSIVSPDGRALAPAQKGAKGEPGFRGP
PGPYGRPGHKGEIGFPGRPGRPGMNGLKGEKGEPGDVSHGLGMRGMPGPPGPPGPPGPPG
TPVYDSNAFVESGRPGPPGLPGLQGPSGPKGDKGEVGPPGPAGQFPFDLLRLGAEMKGEK
GDRGDAGQKGERGDPGTGGFFGSSVPGPPGPPGPPGYPGIPGPKGDSIRGQPGPPGPQGP
PGIGYEGRQGPPGPPGPPGPSSFPGPHRHTVSIPGPPGPPGPPGPPGTLGASSGVRVWAT
YQTLLDKVHEVPEGWLLFVAEREELYVRVRSGFRKVLLEARTPLPRGTDNEVAALQPPVV
QLQEGNPYPRREHSYSTVRPWRADDILANPPRLLDPKPYPGAPHHGAYTHLQPAHPTPLP
VHLHQDFRPVLHLVALNSPLSGGMRGIRGADFQCFQQARAVGLAGTFRAFLSSRLQDLYS
IVRRADRGALPVVNLKDEELSPSWEALFSGTQGQLRPGARIFSFDGRDILRHPAWPQKSV
WHGSDPSGRRLTNSYCETWRTEAPTATGQASSLLAGRLLEQTAASCHHAYAVLCIENSFV
TSSK
NT seq
4515 nt
NT seq
+upstream
nt +downstream
nt
atggcggccaccccccaccggcagcaccgactccctcccggccacaacctggtgccactc
ctgcttccgctggtgacgggcgccctgggtgctcacgcggccccctctgcactcacctct
gaccccctggccccacgctcgcacgtcccggctgcagctttcctcggtgacggtggtgct
tgggttttccgcgtggttcatcctgcggggcaggattcctccagtcctgctaacgactcc
gcgctgctcggggccagcccccggggccctcccgcgcgctgcctgcctctgccggcatcc
ctgcccgtgtgcagccgcctgggcatcgggcacgcctggctgcccaaccacctgcggcac
gagcacggcgaggaggtgcaggccgcggcgcaggtgtgggggcgcctcctgcagacacgc
tgccaccccttcctcgcctggttcttctgcctgctgctggccccgccatgcggcctgggc
cgtccgcctgggcccccaccatgccgccagttctgtgaggccctggaggacgcatgctgg
agctgcctggacgggggccagctgcccgtcgcctgtgcctcgctgcccgcccaggaggac
gggtactgtgtgttcattgggccggctgcagagggctccggcgacgaggtcgggctgctg
cagctcctcggcgagcccccgccccagcaggtgacggaggtggaggaccccgccgtcggg
ctggcctacgtcttcgggccggacgccaacagcggccaggcggcccagtaccacttcccc
agccccttcttccgggacttcttgctgctgttccgcgtccggccggccacggagcgcgcc
ggggtgctgttcgccatcacggacccggcgcaggccgtggtcacgctgggcgtgaaggtc
tcggaggtgcgggacgggcaccagctcatctcgctgctctacacggagccgggcgcccgc
cacacccacacggccgccagcttccgcctgcccgccttcgtcggccagtggctgcgcttc
gcactcagcgtggacggcggccacgtgacgctctacgtggactgcgaggagttccagagg
gtgccgttcacgcgctctgcacagggcctgcggctggagcctggctctggcctctttgtg
gctcaggccggaggagccgaccctgacaagttccagggcagcatcgcggagctgagggtg
cgtggggacccgcagctgagcaccctgcactgcctggacgaggacgacgatgacgatggc
ggggcttccggagacttcgggagtggactggaggagaaccgacagctggccggggaggag
acgggcgcaccccgaacacccagcctccctgagcagcccccggtcacttctcctcccttg
gctggaggcagcagcatagaagattccagaactgaagaaactgaggaagaaaccacggtg
gcctccttaggagctcagccccttcctggctcagatgtggcttccgcgggagaggaggat
gtccagagccccgggggacccctggcaaagggaggccagaaggggcagaagggggagccg
ggagcccggggcctgcctggcccagccgggcctcagggtcccgcaggcccagcggttcag
ggaccggaggcactgccagttccgggggcacaggggccgcctgggcctccaggtccgcca
gggaaggatggtgccccaggaagggacggtgagccgggcgaccctggtgaagatggaaaa
cccggtgaagctgggccccaaggcttccccgggaccccaggagacgtgggccccaagggt
gagaagggggaccctggggtcgggccaagaggacccccagggcctcaggggcctccgggg
ccaccaggaccccccttcagacacgacaagctgaccttcatcgacatggagggatccggc
ttcgggggtgacccagagaccctcagaggcccgcgtggcttccccgggccccccggcccc
ccgggtgtcccaggcctgccgggtgagccgggccgcttcggcctgaacagctcgcacgcg
ccagggcctgccggtctccctggagtgcctgggcgggatgggccccccggcgttcccggc
ccccagggccccccaggcaccccaggaaaagacgggcagccaggaccggcgggacagaaa
ggcagccccggtgacgtgggcgccccaggacccaagggaagcaagggggaccctggcccc
gtgggcttccccggcgagagtggcgtagcaggagcccctgggccagctggaccccaagga
cctcccgggcccccgggcccccccgggccaccaggaccaggacttgctgctggatttgag
gacatggaaggctcggggggacccttttggccgacggcccgaggcactgaaaggctgcag
ggaccacctggacccccaggactcaagggggaccctggaacggctgggacacctggagcc
aagggagaagttggagctgacggagcccccggcttcccaggccttcctgggagagagggt
gctgctgggcccccgggacccaaaggagaaaaggggagtcaaggagaaaaaggagaccca
gggaaggacggagtggggcagcccggcctgcccgggccccctggacccccggggcctgtg
gtctacgtgtcgcagcaagatggagcagtggtgagcgggccgggaccggagggccgccca
ggctttgcaggcttccctggacctgctgggccgaaaggtgacctgggctccaaaggcgag
caaggcctcccgggacccaagggtgagaagggggaacccggcagcatcgtcagccctgat
ggccgagctctggcccccgcccagaaaggagccaagggcgagccgggcttccgaggaccc
ccgggcccgtacggacgtcctgggcacaagggcgagatcggcttccctgggcggccgggc
cgccccgggatgaatggattgaaaggagagaagggggagccgggggacgtcagccatgga
cttggcatgaggggaatgcccggccccccagggcccccagggcccccaggcccccccggg
acacccgtctatgacagcaacgcgtttgttgagtctggtcgccccgggcccccaggactg
ccagggctccagggaccttcgggaccaaagggtgacaaaggagaagtaggccccccggga
ccagcagggcagttcccgttcgacctcctccgcctgggggctgagatgaagggcgagaag
ggggaccgaggggacgctggacagaaaggcgagaggggcgaccctgggaccggcggcttc
tttggctccagcgtgcccggccctcctggtccccccggcccaccgggctaccccgggatt
ccgggtcccaagggggatagcattcggggccagcccggcccccctggaccgcagggaccc
cctggcatcggctacgaggggcgccagggccctcctgggcccccgggaccgcccgggccc
tcctcattccctggccctcacaggcacactgtcagcattcctggcccaccaggcccaccc
ggtcccccaggacccccgggaaccctgggcgcctcctcaggcgtgagggtctgggccacc
taccagaccctgctggacaaggtgcacgaggtgcccgagggctggctcctcttcgtggcc
gagagggaggagctgtacgtccgcgtccgcagcgggttccggaaggtgctgctggaggcc
cggacgcctctcccgcgagggacggacaacgaagtggctgccctgcagccccccgtggta
cagctgcaggagggcaacccctacccccgtcgggagcactcctactccactgtgcggccc
tggcgggcagatgacatcctggccaaccccccacgcctgctggaccccaagccctacccc
ggggccccacaccacggcgcctacacacacctccagcccgcccaccccacgcccttgccc
gtgcacctccaccaggacttccggccggtgctccacctggtggcgctcaacagccccctg
tcgggcggcatgcggggcatccgcggggccgacttccagtgcttccagcaggcgcgggcc
gtggggctggccggcaccttccgcgccttcctgtcctcgcgcctgcaggacctgtacagc
attgtgcgccgtgccgaccgcggggcgctgcccgtggtcaacctcaaggacgaggagctg
tcccccagctgggaggccctgttctcaggcacccagggccagctgaggccgggagcccgc
atcttctcctttgacggcagggacatcctgcggcacccagcctggccccagaagagcgtg
tggcatggctcggaccccagcgggcgcaggctgaccaacagctactgcgagacgtggcgg
acagaagcgccgacggccacaggccaggcctcgtcgctgctggcgggcagactgctggag
cagacggccgcgagctgccaccacgcctacgccgtcctctgcatcgagaacagcttcgtg
acctcctccaagtag
DBGET
integrated database retrieval system
