Oryctolagus cuniculus (rabbit): 103349792
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Entry
103349792 CDS
T03373
Name
(RefSeq) collagen alpha-1(XIX) chain isoform X1
KO
K24340
collagen type XIX alpha
Organism
ocu
Oryctolagus cuniculus (rabbit)
Pathway
ocu04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
103349792
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ocu00536
]
103349792
Glycosaminoglycan binding proteins [BR:
ocu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
103349792
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
103349792
NCBI-ProteinID:
XP_051711487
Ensembl:
ENSOCUG00000009592
LinkDB
All DBs
Position
12:complement(98924731..99327492)
Genome browser
AA seq
1214 aa
AA seq
DB search
MRPPSPLGPLLGGAAALPGLHGASEGLSHQFKICVHLFTWFQGTMRRTGSWKLWLWMAMF
LLPASTSVSVRDKPEKSCPILRTEGHQFIQDSRNKLEASGFDLGERFSLRRAFCEGDKTC
FKLGSSLLIRDTTTIFPTGLPEEFSVAATFRVRRSTKKERWFLWQVLNQHNMPQISIVVD
GGKKVVEFMFQATEGDMLNYIFKNRELRSLFDRQWHKLGISVQPRVISLYMDCNLIVSRQ
TDEKDTMDLQGRTVIAARASDGKPVDIELHQLKIYCNANFIAQESCCEISDTKCSEQDDF
GSTASSSVTTYAGKMSAYLPAKQELQDLCQCIPNKGEAGLPGVPGSPGQKGNKGEPGSVG
SKGEFGVPGIPGEKGENGLHGVPGLPGQKGEQGSEGNKGEIGEKGEKGSKGDPGLAGLNG
QDGLKGDLGPRGPPGPKGEKGDMGPPGLPALTDSLGMQGPQGPPGKEGQRGRRGKPGPPG
KPGPPGPPGPPGLQGIQQAFDEHYNKGNGEHGVGNPKGEKGETGLPGFPGSVGPKGQKGE
PGEPFTKGEKGDRGEPGTVGLQGVKGEPGDPGPPGLIGSPGLKGQQGPAGIMGPRGPPGD
VGLPGEHGIPGKQGIKGEKGDPGGIIGPPGLPGPKGEAGPPGESLPGEPGLDGNPGAPGP
RGPKGERGLPGVHGSPGDIGPPGIGIPGRAGSQGPAGEPGIQGPRGLPGLPGTPGNDGAP
GRDGKPGLPGPPGDPIALPLLGDIGALLKNFCGNCQANVPGLKSNKGEDGGAGEPGKYDS
VTRKGDIGPRGPPGIPGREGPKGSKGERGYPGIPGEKGDEGLQGIPGLPGAPGPSGPPGL
LGRTGHPGPMGAKGDKGSEGPPGKPGPPGPPGVPFNEGNGMSSLYKIQGGVNVPSYPGPP
GPPGPKGDPGPAGEPGAMGLPGLEGFPGVKGDRGPAGPPGIAGISGKPGVPGPPGVPGEP
GERGPVGDIGFPGPEGPSGKPGINGKDGLPGAQGIMGKPGDRGPKGERGDQGIPGDRGPQ
GERGKPGLTGVKGAVGPVGPPGSKGSMGSPGQQGPPGSPGVPGTPADAVSFEEIKKYINQ
EVLRIFEERMAVFLSQLKLPAAMLAAQAHGRPGPPGKDGLPGPPGDPGPQGYRGQKGERG
EPGIGLPGSPGLPGTAALGLPGSPGVPGPQGPPGPSGRCNPEDCLYPVSPAHQQTGAASG
PSCCTADPAPCSCV
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgcgtcccccgtccccactcgggccactcctcggcggtgcggcggccctgcccggactc
cacggcgcctccgaagggctctcccaccaattcaagatttgtgtccacttgttcacatgg
tttcaaggcacaatgaggcgcactggctcttggaaactctggctttggatggcaatgttc
ctgcttcctgcttccacttccgtgtcagtcagggacaagccagaaaaatcatgtcctata
ctaagaacagagggacatcagtttatacaagacagcaggaataaacttgaagcctcaggt
tttgatctaggagagagattttctctgagacgtgcattttgtgaaggtgataaaacctgt
ttcaagttgggaagttcacttcttattagagatactactacaatatttcccacaggcctt
cctgaggagttctctgtagcagccacatttcgtgtacgcagaagcaccaaaaaggaacgt
tggtttctatggcaagttttaaaccagcacaatatgccacagatttctatcgtagttgat
ggtggaaagaaggtggtggaatttatgttccaagctacagagggagatatgttgaactac
atttttaaaaaccgagaactgcgttctttgtttgatcgtcagtggcataaacttggcatc
agtgtacaacccagggtcatttcgctctatatggattgtaatttaattgtgagccggcag
actgacgaaaaggacaccatggatcttcagggaaggacagtcattgctgcgcgagcgtca
gatggcaagcctgtggacattgaacttcaccaacttaaaatctactgtaatgcaaacttc
atagctcaagaatcatgctgtgaaatatcagataccaagtgctccgagcaggatgacttt
ggaagtactgcatcatcatcagtaacaacttatgccggtaaaatgtctgcatatcttcca
gcaaagcaagaacttcaagacttgtgccagtgcattccaaacaagggagaagcaggatta
cctggagttccaggctcacctggacagaaagggaacaaaggcgagccgggttcagttggc
agtaaaggtgaatttggtgttcctggaattcctggagaaaagggtgaaaatggtttacat
ggtgttccaggcttacctggtcaaaagggagagcaaggttctgagggcaacaaaggagaa
attggtgaaaagggtgaaaaaggatcaaaaggagacccaggtctggctggccttaatgga
caagatggtctgaaaggtgacttgggtcctcgtggtccacctggcccaaaaggagaaaag
ggagacatgggacctccaggactaccagccttaacagattccctaggcatgcaaggcccc
caaggtccacctggaaaagaaggtcagaggggaagacgaggaaaaccaggacctccagga
aaaccgggacccccaggaccacctggacctccaggattgcaaggaatacaacaggctttt
gatgaacattataacaagggaaatggtgaacatggagttggcaaccccaaaggagaaaag
ggtgaaactggactaccaggatttccaggatctgttggccctaaagggcaaaaaggagaa
cctggggaaccttttacaaaaggtgaaaaaggagacagaggagaacctgggacagtaggt
ttacaaggagtaaagggagaacctggagatcctggtccgccaggtttaataggcagccca
ggactaaagggtcagcaaggacctgcaggcatcatggggcccagaggaccacctggagat
gttggcttgccaggagaacatggtatcccaggaaaacaaggaattaaaggagaaaaggga
gatcctggtgggattataggccctcctggacttccaggtccaaaaggtgaggctggtcct
ccaggggaaagcctgccaggggagccaggtttagatggaaatcctggagcacccggtcca
cgagggccaaagggtgaaaggggactgccaggtgtccatggctccccaggagacataggc
ccaccaggaataggaattcctggccgagctggctcccaaggaccagctggagaaccgggt
atccagggtcctcgaggtctccccgggctgccagggaccccagggaatgatggagctcca
gggagggatggaaagccaggcctgccaggccccccaggtgacccaattgcacttcctctc
ttgggagacatcggtgccttgctcaagaacttctgtggcaactgccaagccaatgtccct
gggctgaaaagtaacaaaggggaggatggaggagctggtgaacctggaaagtacgattcc
gtgacccggaagggtgatataggaccccggggtcctccaggaatcccaggcagagaggga
ccaaagggaagcaaaggagagcggggctaccctggaatacctggggagaaaggtgatgag
ggtcttcaaggaattccaggccttccaggtgctccaggcccaagtggaccccctggctta
ttgggaagaactggacaccctggtccaatgggagcaaagggtgacaagggcagtgaaggc
ccccctgggaaacccggaccacctggaccacctggtgtaccattcaatgaaggaaacggc
atgagcagtttatataaaatccagggaggtgtgaatgtgcccagttacccagggccacct
ggtccccctggccctaaaggagatcctgggccagcgggagagcctggtgcaatgggattg
ccgggactagaaggatttccaggcgtgaagggagatagaggccctgcaggtcccccagga
atagctggtatatcgggaaaacctggtgtcccagggcctccaggagttccaggggaaccg
ggtgaaagaggacctgttggagatataggtttccctggaccagaaggaccctcaggaaag
ccaggaataaatggaaaagatggattaccaggtgctcagggcatcatgggtaagcctgga
gatagaggccccaaaggagaacgtggtgatcagggaattccaggagacagaggcccacaa
ggtgaacgggggaaaccaggccttacaggcgtgaagggggccgtaggtcctgtgggacca
cctggaagcaagggttccatgggctcccctggccaacaaggccctccaggctcaccaggt
gtacctggcactccggctgatgcagtttcatttgaagaaataaagaagtatattaatcaa
gaggtcctaagaatttttgaagagaggatggctgtgttcctatctcagctcaagttgcct
gctgcaatgctagctgctcaagcccacgggagacccggcccaccagggaaggatgggtta
cctgggccaccaggagatcctggcccccaaggctaccgaggacagaagggagaaagaggt
gaacctggaattgggctaccagggagtccggggcttcctggaactgcagctctgggtttg
ccaggatcaccaggtgtcccaggaccccaaggccccccaggacccagtggaagatgcaat
ccagaagattgcctatatcctgtgtctcctgcccatcagcagacaggtgctgcttccggt
cccagttgctgcactgctgatccagctccctgctcatgtgtctag
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