Oryctolagus cuniculus (rabbit): 103349793
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Entry
103349793 CDS
T03373
Name
(RefSeq) collagen alpha-1(IX) chain isoform X1
KO
K08131
collagen type IX alpha
Organism
ocu
Oryctolagus cuniculus (rabbit)
Pathway
ocu04151
PI3K-Akt signaling pathway
ocu04510
Focal adhesion
ocu04512
ECM-receptor interaction
ocu04518
Integrin signaling
ocu04820
Cytoskeleton in muscle cells
ocu04974
Protein digestion and absorption
ocu05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
103349793
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
103349793
04518 Integrin signaling
103349793
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
103349793
09142 Cell motility
04820 Cytoskeleton in muscle cells
103349793
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
103349793
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
103349793
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ocu00535
]
103349793
Proteoglycans [BR:
ocu00535
]
Extracellular matrix (ECM) proteoglycans
Others
103349793
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_2
Laminin_G_3
Toxin_R_bind_N
DUF4882
Motif
Other DBs
NCBI-GeneID:
103349793
NCBI-ProteinID:
XP_008261311
Ensembl:
ENSOCUG00000012367
UniProt:
G1T368
LinkDB
All DBs
Position
12:98817498..98924457
Genome browser
AA seq
921 aa
AA seq
DB search
MKNCWKIPAFFFICSFLGPWASAAVKRRPRFPVNSNSNGGNELCPKVRIGQDDLPGFDLI
SQFQIDKAASQRAIQRVEGSTTLQVAYKLGSNVDFRIPTRHLYPSGLPEEYSFLTTFRMT
GSTLEKNWSIWQIQDSSGKEQVGVKINGQTKSVAFSYKGLDGSLQTAAFSNLPSLFDSQW
HKIMIGVERSSATLFVDCVKIESLPIKPRGQIDVDGFAVLGKLADNPQVSVPFELQWMLI
HCDPLRPRRETCHELPVRITPSQTTEERGPPGEQGPPGPPGPPGVPGIDGIDGDRGPKGP
PGPPGPVGEPGKPGAPGKPGTPGADGLTGPDGSPGSVGPRGQKGEPGVPGSRGFPGRGIP
GPPGPPGTAGLPGELGRVGPIGDPGRRGPPGPPGPPGPTGAIGFHDGDPLCPNSCPPGRS
GYPGLPGMRGHKGAKGEIGEPGRQGHKGEEGDQGELGEVGAQGPPGAQGLRGITGVVGDK
GEKGARGLDGEPGPQGLPGAPGDQGQRGPPGEAGPKGDRGAQGLRGIPGPPGPKGDAGLP
GVDGRDGIPGMPGTKGEPGKPGPPGDAGLQGLPGIPGLPGAKGVAGEKGNTGAPGKPGQL
GNSGKPGQQGPPGEVGPRGPRGLPGSRGEVGPVGAPGIPGKLGSVGSPGLPGLPGPPGLP
GMKGDRGAVGEAGPKGEQGASGEEGEAGERGELGDIGLPGPKGSVGNPGEPGLRGPEGSR
GLPGVEGPRGPPGPRGVQGEQGATGLPGIQGPPGRAPTDQHIKQVCMRVIQEHFAEMAAS
LKRPDSGASGLPGRPGPPGPPGPPGENGFPGQMGIRGLPGIKGPPGALGLRGPKGDLGEK
GEPGPPGRGPKGLPGATGLPGDPGPASYGRNGRDGERGPPGVAGIPGVPGPPGPPGPPGF
CEPASCTLQAGQRAFSKGPDQ
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atgaagaactgctggaaaattccagctttcttcttcatctgcagtttcctgggaccctgg
gcatctgcggcagtcaagcgtcgcccaagatttcctgtcaattcaaattctaatggtgga
aatgaactctgtccaaaagtcaggattggtcaagatgatttacctgggtttgacctgatt
tctcagttccagatagataaagcagcatctcaaagagctatccagagagtagagggatca
actacattacaagtggcttacaagttgggaagtaatgtagacttcaggattccaaccagg
catttatatcccagcggactgcctgaagaatactcctttctaactactttccggatgact
ggaagcacacttgaaaagaactggagcatttggcagattcaggattcctcagggaaggag
caagttggtgtgaagattaatggccaaaccaaatcggttgcattttcatacaagggactg
gatggaagcctccaaactgcagctttttcaaatttgccctccttgttcgattctcagtgg
cataagatcatgattggcgtggaaaggagtagtgctactctttttgttgactgtgtcaaa
attgaatccttacccattaaaccaagaggccaaattgatgtcgatggctttgctgtgctg
ggaaaacttgcagataatcctcaagtttctgttccatttgaacttcagtggatgctgatt
cattgtgaccccctgcggcccaggagagaaacttgccatgagctgccagtgagaataacg
cccagccagaccactgaagagcgaggtcccccaggtgagcaggggcctcctgggcctccg
gggccccctggagttcctggcatcgatggcatcgacggtgacagaggtcccaagggtccc
ccgggccccccgggtccagttggagaaccaggaaagccaggagctccaggcaagcccggc
acgcctggtgccgatggtttaacaggacctgatggatctcctggctctgttggaccaagg
ggacaaaaaggagaacctggtgtgcctggatctcgtggatttccaggccgtggtattcct
ggaccccctggtcctcctgggacagcaggactccctggagagcttggccgagtaggaccc
attggagaccctgggagaagaggaccacctggcccccctggacccccaggacccactgga
gcaatcggctttcatgatggagatccactgtgtcccaattcctgtccaccaggtcgctca
ggatatccaggcctaccaggcatgaggggccataaaggggcaaagggagaaattggtgaa
ccaggaagacaaggacacaagggtgaagagggtgaccaaggagaactgggagaagttgga
gctcaaggacctccaggagctcaaggtttgagaggcatcactggcgtagttggagacaag
ggggaaaaaggtgctcgcggcttagatggagaacctggacctcagggtcttcctggtgca
cctggtgatcaaggacagcgaggacctcctggagaagcaggtcccaagggagatagaggg
gctcaaggtttgagaggaatccctggcccccctggacccaaaggagatgcgggcttgcca
ggtgtggatggccgtgatggaatacctggaatgcctggaacaaagggtgaaccagggaaa
cctggacctcctggtgatgcgggactacagggattaccgggtatacctggacttcctggt
gcaaagggtgttgccggtgaaaagggtaacacaggtgctccaggaaagcctggtcaactg
ggaaattctggcaaaccgggccaacaagggcctccaggagaagtgggaccccgaggaccc
cgggggcttcctggcagtagaggtgaagtaggaccagtcggagctccaggcataccaggc
aaattgggttctgttggcagccccggcctccctggcttgcctggccctcctggacttcct
ggaatgaaaggtgacaggggagcagttggtgaagctgggccaaagggcgaacagggtgcc
tcgggtgaagaaggcgaagcaggagaaaggggtgaacttggagatataggattacctggc
ccgaagggatctgtgggtaatcctggggagccaggcttgagagggcctgaaggaagtcgg
gggcttcctggagttgaggggcccagaggaccacctggaccccgaggtgtgcaaggagaa
cagggtgccacaggcctgcctggcatccagggccctccgggtagagcaccgacagaccag
cacattaagcaggtttgcatgagagtcatacaagaacattttgctgagatggctgctagt
ctcaaacgtccggactcaggtgcctcgggcctccctggaagacctggcccccctggcccc
cctggtcctcctggagagaatggtttccccggccagatgggaattcgtggcctcccaggc
attaaaggcccccctggtgctcttggtttgaggggacctaagggtgacttgggagaaaag
ggggagcctggtcctccaggaagaggtcccaaaggtttgcctggagctacaggtctccca
ggtgacccaggccctgccagctacgggagaaatggccgggatggcgagcgaggaccgcca
ggggtggcaggaattcctggtgtgcctggccctccaggtcctcctggccctcctggtttc
tgtgagccagcttcttgcaccttgcaggcgggtcagcgggcatttagtaaagggcctgat
cagtga
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