Oryctolagus cuniculus (rabbit): 103350728
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Entry
103350728 CDS
T03373
Name
(RefSeq) collagen alpha-1(XXV) chain
KO
K24356
collagen type XXV alpha
Organism
ocu
Oryctolagus cuniculus (rabbit)
Pathway
ocu04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
103350728
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ocu00536
]
103350728
Glycosaminoglycan binding proteins [BR:
ocu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
103350728
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
103350728
NCBI-ProteinID:
XP_017202855
Ensembl:
ENSOCUG00000000201
LinkDB
All DBs
Position
15:37194375..37710977
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AA seq
713 aa
AA seq
DB search
MLVKKHTGKGGGREPGPADASPAGQRCAAAGPQCAALAALLSVVAILSCLYLGVKTNDLQ
ARIAALESAKGAPSIPLLSDTEDQLKAMVQEKVERLLAQKSYEHMAKIRIAREAPSECNC
PAGPPGKRGKRGRRGDSGPPGQPGPQGPPGPKGDKGEQGDQGPRGLPGFPTVAALHSNQI
LTVKGDQGQAGPPGPPGPPGPRGPPGDTGKDGPRGMPGVPGEPGKPGEQGLMGPLGPPGQ
KGSVGAPGIPGTNGQKGEPGLPGAVGQNGIPGPKGEPGEQGEKGDAGENGPKGDTGEKGD
PGSSAAGIKGEPGESGRPGQKGEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGTKGER
GEAGPPGRGERGEPGAPGPKGDHGDKGDSGALGPRGPPGPKGDQGATEIIDYNGNLHEAL
QGPPGPPGPQGLQGPKGEQGSPGIPGVDGEQGLKGSKGDMGDPGMPGEKGGIGLPGLPGA
NGMKGEKGDSGLPGPQGPSIIGPPGPPGPHGPPGPMGPHGLPGPKGEPGLNGVKGLKGEP
GQKGDRGPLGLPGASGLDGKPGSRGIDGPVGPHGPAGPKGERGEKGAMGEPGPRGPYGLP
GFPGPRGEKGDLGEKGEKVTSLPACACVTLLTLSALLLHLCDSFSCLVHPYPVLQKPTDA
SSEDSGLSQMKSAALLEIRGLSSIGEKISPDIQAIVFQLPDANSLKNMISWGY
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgctggtgaagaagcacacggggaaaggaggaggccgggagcccggaccggcggacgcg
agccccgcggggcagcgctgcgctgcggctggaccccagtgcgcggccttggcagccctc
ctgtcagtggtggccatcctgtcttgtctgtacctgggggtgaaaaccaatgacctccag
gcgcggatagccgctctggaatcggcgaaaggggccccttccattcctctgctgtctgat
accgaggatcagctcaaggccatggtgcaggagaaagtggagcgccttctggctcagaaa
tcctatgaacatatggctaaaataagaattgcaagagaagcaccttcagaatgcaactgc
ccagcaggccctccagggaaacgaggtaagaggggccgaagaggagactctggtcctcct
ggtcagcctggtcctcagggccctcctggtccaaaaggtgataagggagaacaaggtgat
caagggcctcggggtctgccaggcttccccacagtcgctgccctgcacagtaatcagatc
ctcaccgtcaagggtgaccaaggacaagcagggcctccaggacccccaggccctccaggc
ccaagagggccacctggggacacagggaaagatggtccccgtggaatgcctggagtaccc
ggtgaaccagggaaaccaggagaacaaggcttgatgggtcctctggggcctccaggacaa
aagggttcagttggagcacctggaattccaggaacaaatggacaaaagggtgagcctggg
ttgcctggagcagtgggacagaatggaataccagggccaaagggagaacctggagaacaa
ggagaaaagggagatgctggagagaatggccccaaaggtgatacaggcgaaaagggtgac
cctggatcatctgctgcaggaatcaagggagaacctggagaatctggtcgtccagggcaa
aagggtgaaccagggcttcctgggcttcctggacttccggggataaagggagaaccaggt
ttcattggtcctcagggggaaccaggcttaccagggttaccaggaaccaaaggtgaacgt
ggggaggcagggcctcctggaagaggtgagcgaggggagcctggagcccctggacccaag
ggtgaccatggagacaaaggggactctggagctctgggcccaagaggtccacccggtcca
aaaggggatcaaggagccaccgagatcatagactacaatggtaacctccatgaagcctta
cagggcccccctggacctccaggacctcaaggactacaagggccaaagggagagcaggga
tctccaggaatcccaggagtagatggagagcagggactcaaaggctcaaagggagacatg
ggcgacccaggtatgccaggtgaaaaaggaggaattggacttccaggattaccgggtgcc
aatggaatgaaaggagaaaaaggagactccggattgcctggtcctcagggtccttctatc
ataggcccaccaggcccaccaggtccccatggcccacccggccccatggggccccatgga
cttcctggaccgaagggtgaaccagggttaaatggtgttaaaggattgaagggtgaacca
ggtcaaaagggtgacagaggaccccttggtcttccaggagcatctggcttagacggaaag
ccaggatcccggggtatagatggtcctgtgggaccccatggccctgctggtcccaaagga
gaaagaggtgaaaaaggagctatgggagagcctggacccagagggccctacggcctacct
ggcttccctggtccacggggcgagaagggcgacctaggagaaaagggagaaaaggtgacc
tccctgccagcatgtgcctgtgtgactcttctcacgctgtctgctttgctgctgcacctg
tgtgattccttctcatgcctagttcatccctatcctgtgctccaaaaacccactgatgcc
tcatccgaggattcaggccttagccaaatgaagtcggcagcactgctggaaatcagggga
ctgtctagcataggagaaaaaatatccccagatatccaagctatagtctttcagttacct
gatgccaattctttgaaaaatatgatatcctggggttattga
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