Oryctolagus cuniculus (rabbit): 108176892
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Entry
108176892 CDS
T03373
Name
(RefSeq) collagen alpha-3(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
ocu
Oryctolagus cuniculus (rabbit)
Pathway
ocu04151
PI3K-Akt signaling pathway
ocu04510
Focal adhesion
ocu04512
ECM-receptor interaction
ocu04820
Cytoskeleton in muscle cells
ocu04926
Relaxin signaling pathway
ocu04933
AGE-RAGE signaling pathway in diabetic complications
ocu04974
Protein digestion and absorption
ocu05146
Amoebiasis
ocu05165
Human papillomavirus infection
ocu05200
Pathways in cancer
ocu05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
108176892
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108176892
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108176892
09142 Cell motility
04820 Cytoskeleton in muscle cells
108176892
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
108176892
09154 Digestive system
04974 Protein digestion and absorption
108176892
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
108176892
09162 Cancer: specific types
05222 Small cell lung cancer
108176892
09172 Infectious disease: viral
05165 Human papillomavirus infection
108176892
09174 Infectious disease: parasitic
05146 Amoebiasis
108176892
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
108176892
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ocu04147
]
108176892
00536 Glycosaminoglycan binding proteins [BR:
ocu00536
]
108176892
Exosome [BR:
ocu04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
108176892
Glycosaminoglycan binding proteins [BR:
ocu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108176892
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
108176892
NCBI-ProteinID:
XP_051705045
Ensembl:
ENSOCUG00000000111
LinkDB
All DBs
Position
7:complement(4575124..4728714)
Genome browser
AA seq
1668 aa
AA seq
DB search
MAPSVRSGTVPRSPALLLRLLLLLPAAAPAAAKGQCFCQGAKGDKGEKGFPGPPGSPGQK
GFPGPEGLPGPQGLKGSPGLPGLTGPKGVRGVTGLPGFSGPPGLPGTPGNAGPYGLVGVP
GCNGSKGEQGFPGLPGTPGYPGVPGAAGLKGQKGAPAKGEDIELGGKGDPGLPGMPGFQG
FPGPAGFPGPIGPPGPPGFFGLPGVTGPRGPKGHMGDSVIGQKGDQGVKGLTGPPGPPGT
VIVTLTGPANRTDLKGEKGDKGAMGEAGPPGPSGPPGESYGSEKGAPGEPGSQGKPGKDG
APGFPGTEGAKGNRGFPGLTGEVGIKGWKGDIGPPGFRGPTEYYDTYQQKGDEGIPGPPG
PKGARGPQGPVGPPGAPGSPGPSRPGPRGAPGWPGLQGRKGERGPPGKDAVGPPGAPGCP
GSPGLLGPPGSPGPPGDVVFRMGPPGDRGLPGHIGFPGIPGLDGPKGEPGLLCTQCPCTP
GAPGLPGRPGLDGVKGIPGGQGAAGPKGSPGSPGSTGPPGFPGFPGTQGDPGLKGGKGET
PEPQGQAGAPGDPGLRGPPGRKGLAGIPGTPGLKGLPGPRGEPALSGEKGDQGPPGDPGS
PGSPGPAGPAGPPGYGPQGEPGPKGTQGVPGAPGPPGEAGPKGEPSVSTAVPGPPGPPGP
PGRAGPQGPPGVPGLKGRCADPGLPGPDGEPGIPGIGFPGPPGPKGDQGFPGTKGSPGCP
GEMGKPGIPGKPGLPGAKGEPALAMPGEPGKQGFPGERGNSGEYGEIGLPGLPGRPGIPG
KEGLDGPRGDPGQPGPPGETGLPGRCFQGPRGAQGLPGLNGLMGQPGRRGETGPKGDPGI
PGLDRPGFPGEPGPPGMPGHGGEVGPPGPKGYPGNPGFSGPPGERGKMGMMGYPGTTGPP
GLPGSPGYPGRRGSLGIPGVKGQRGPPGDEGERGDRGNPGPARLIQVKGDKGEPGPKGLA
GNPGEKGSRGIPGLPGLKGLEGPPGPPGPPGPKGDLGIIGSPGEPGPRGEPGTMGHMGVP
GSKGKRGTFGLPGLAGTPGLPGISGLQGDKGEPGYAEGTRPGPPGPKGDPGLPGDVGKKG
ERGPPGPPGHSGPAGPAGVPGSPGSPGLPGMPGPDGEMGSKGIKGFPGHPGIKGPPGLPG
FPGSPGPVGMRGNQGHDGIPGPPGEKGETGLLGAHPGPRGHPGAKGAKGDRGAPGLPGPP
GRKGSMGDAGPQGPTGTAGLPGPPGLPGAIIPGQKGNQGPPGSRGNPGEPGPPGPPGSQV
TGIKGDKGFVGHPGPKGPPGTIGDMGPPGHPGAPGAPGLPGLRGDPGFRGFPGMRGEKGN
PGSPGPTGPPGPTGPKGPPGVRGDPGTLQIISLPGSPGPPGPPGEPGMQGEPGPPGPPGS
PGPCGPKGKPGKDGKPGVPGPAGEKGNKGSKGEQGPPGSEGLPGMKGKPGDTGPPAPGTT
MRGFVFTRHSQTTAIPSCPEGTEPLYSGFSLLFVQGNEQAHGQDLGTLGSCLQRFTTMPF
LFCNINDVCNFASRNDYSYWLSTPALMPMDMAPITGKALEPYISRCTVCEGPAIAIAIHS
QSTDVPPCPQGWISLWKGFSFIMFTSAGSEGAGQALASPGSCLEEFRANPFIECHGRGTC
NYYSNSYSFWLASLNPQRMFRKPIPSTVKAGELEKIISRCQVCMKKRH
NT seq
5007 nt
NT seq
+upstream
nt +downstream
nt
atggcacccagcgtgcgctccgggacggtgcccaggtccccggcgctcctgctgcggctc
ctactgctgctcccggctgctgcgcccgcggcggccaagggccagtgcttctgccaggga
gccaaaggggacaagggggagaaaggttttcctggaccccctggttctcctggccagaaa
ggattcccaggtcctgaaggcttgcccggaccccagggactcaagggctctccaggactt
ccaggactcactggtcccaaaggtgtgaggggagtaactggattaccaggattttcaggt
cctcctggacttccaggcaccccgggcaatgctgggccttatggacttgttggtgtacca
ggatgcaatggttctaagggtgagcaaggcttcccaggacttccaggtacaccaggctac
ccaggggtcccgggtgctgctggcctgaaaggacaaaagggtgctcctgctaaaggagaa
gatatagaacttggtggaaaaggggaccctgggttgccaggaatgccaggatttcagggt
ttcccaggccctgcaggttttcctgggcctattggcccacctggccctccaggattcttt
ggtcttcccggagtcacaggacctagaggacctaagggtcacatgggtgatagtgtgata
ggacaaaaaggcgatcagggtgtgaaagggttaacaggacccccaggaccaccaggaaca
gttattgtgacattgacgggtccagctaacagaacggacctcaagggtgagaagggagac
aagggagcgatgggagaagctggacctcctggaccctcgggaccacctggagaatcctac
ggctctgagaagggtgctcctggagaacctggctcacagggaaaacctgggaaggatgga
gcccctggcttccctggcactgagggagccaagggcaacaggggcttccctgggttaaca
ggagaagttggcattaagggatggaaaggagatattggccccccaggatttcgtggtcca
acagaatattatgacacataccagcaaaagggagatgaaggaattccaggcccaccaggc
cccaaaggagctcgtggcccacagggtcctgttggtccccctggagctcctggcagtcct
ggaccatcaaggcctggccccagaggagctcctggatggccgggcttgcaaggaagaaaa
ggagagcgaggacccccagggaaggatgcagtggggcctccgggggccccaggctgtcct
ggttcaccaggccttttagggccaccaggatctccaggaccaccaggtgatgtcgttttt
cgcatgggtccacccggggaccgtgggctgccaggccatatagggtttccagggattcca
ggacttgatgggcctaaaggagaaccaggcctgctgtgcacacagtgtccgtgcaccccc
ggggcccccggcctcccaggacggcctgggttagatggtgtaaaaggaatcccaggagga
caaggtgcagctggcccaaaaggaagcccagggtcgccaggaagcacaggccctccagga
tttccaggattcccaggaacacagggtgatccaggacttaaaggaggaaaaggtgaaacg
cctgagccccaggggcaagcaggtgccccaggggatccggggctcagagggccaccaggg
agaaagggcttggcggggattccaggaactccaggactgaaaggattaccaggacctaga
ggtgaaccggccctgagtggtgagaagggggaccagggtcctccaggggatcctggctcc
cctgggtccccaggacctgcaggaccagctggaccacctggctatggacctcagggagag
cctggtccaaagggcacccaaggagttcctggagcccctggaccacctggagaagccggt
cctaagggggaacccagtgtttcaacagcagtcccaggccctcctggacctccagggccc
cctggccgtgctggcccccaaggtccacctggtgtccctggactgaagggcagatgtgct
gaccctggtcttcctggacctgatggtgaaccagggattccaggaattggatttcctggg
cctcctggacctaaaggagaccaaggttttccagggacaaagggttcaccagggtgtcct
ggagaaatgggaaagccagggatacctggaaagccaggcctcccaggagccaagggagaa
ccagctctagccatgcctggagaaccaggaaaacaaggttttccaggagaaagaggcaat
tctggggaatatggagaaatcggactccctggacttccaggtcgccctggaattccagga
aaagaagggcttgatggaccacgaggagatccagggcagcctggaccacctggagaaaca
ggattaccaggaaggtgctttcagggtcccaggggagcccagggtcttccaggcttaaat
ggactgatgggacagccaggcagaagaggcgaaacaggcccaaaaggagacccagggatt
ccaggcctggatagaccaggatttcctggggaaccaggaccacctggaatgccaggtcat
ggaggtgaagtgggaccacctggtccaaaaggatatccagggaatccaggattctcaggg
ccaccaggtgaaaggggaaagatggggatgatgggctatcctggaaccacaggccctcct
gggcttcctgggagccccggctaccctgggcggaggggcagccttggaatcccaggagta
aagggccagagagggcccccaggagacgaaggggaacgaggggacagaggaaatcctgga
cctgcacgattaattcaggttaagggggacaaaggagaaccggggcctaaaggacttgca
ggaaatccaggagagaaaggaagcagaggcatcccagggttaccaggtctaaaaggtctt
gaagggccccctggaccaccaggaccaccaggtcccaaaggagatctgggaatcattggg
agtcctggggagccagggccacgtggtgagccaggaaccatggggcacatgggcgtgcca
ggttctaaaggaaaaagggggacttttggactcccaggtctggctggaacaccaggcctg
ccaggtattagcggtcttcaaggagataagggagagccaggttatgcagaagggacaagg
ccaggaccaccaggaccaaagggggatccaggactgccaggagatgtgggaaagaaagga
gaaagagggccacctggcccacccggacattcagggcctgctggacctgcaggagtcccc
gggagtcccggaagccctggccttccaggaatgccgggtcctgatggtgagatggggtct
aaaggaatcaaaggcttccctggacacccaggaataaaaggccctccaggccttccagga
ttcccaggatctcctgggccagtgggtatgagaggcaaccaagggcatgatggaattcct
ggtccacctggagaaaaaggagaaacaggtttgctgggagcccatccaggcccaagagga
caccctggtgctaaaggggccaaaggagacaggggagctcccggcttgcccggcccgcct
ggcaggaaagggtccatgggagatgcagggcctcaaggacccacaggcacagcaggactc
ccagggccaccaggcctgcctggcgcaatcatccctggccagaaaggaaatcaaggccca
cccggctcaaggggaaacccaggtgaacctggtcccccaggacctccagggagtcaggta
acaggcataaaaggagacaaaggatttgtgggccaccctggtccaaaaggtccacctgga
actataggagatatgggaccgccaggtcatccgggagcgcctggtgcccctggacttcca
gggctcagaggtgatcctggcttcagaggatttccaggcatgagaggagagaaaggtaat
ccaggatccccaggaccaactggaccaccagggccaactgggccaaaaggaccacctggt
gtacgtggagaccctggcacacttcagatcatctccctcccaggaagtccggggccacct
ggcccacctggagaaccagggatgcaaggagaacctggcccaccagggccaccaggaagc
ccaggaccttgtgggcccaaagggaaacctggcaaggatgggaaaccaggagttcctgga
ccagctggagaaaaaggcaacaaaggttctaaaggagagcaaggaccacctgggtcagaa
ggcttgccaggtatgaagggaaagcctggagacacagggccacctgcacctggaacaaca
atgagaggttttgtcttcacccgacacagtcaaacaacagccattccttcgtgtccagaa
gggacagagcccctctacagtgggttttctcttctttttgtacaaggaaatgaacaagcc
catggacaagaccttggaactcttggcagctgcctgcagagatttaccacaatgcctttc
ttattctgtaacatcaatgatgtctgtaattttgcatctcgaaacgattattcatactgg
ctgtcaacaccagctctgatgccaatggacatggctccaattactggcaaggccctcgag
ccttacattagcaggtgcaccgtctgtgagggtcctgcgattgccattgccattcacagt
caaagcactgatgttcccccctgtccccagggctggatttctctctggaaaggattttct
ttcatcatgttcacaagtgcaggttcggagggcgctgggcaagcactggcatcccctggc
tcctgcctggaagaattccgagccaatccgtttatagaatgtcatggaagaggaacgtgc
aactactattcaaattcctacagtttctggctggcttcattaaacccacaaagaatgttc
agaaaacctattccatctactgtgaaagctggggagttagaaaaaataataagtcgctgt
caggtgtgcatgaagaaaaggcactga
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