Oryctolagus cuniculus (rabbit): 127485576
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Entry
127485576 CDS
T03373
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 1 isoform X1
KO
K14401
cleavage and polyadenylation specificity factor subunit 1
Organism
ocu
Oryctolagus cuniculus (rabbit)
Pathway
ocu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127485576
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ocu03021
]
127485576
03019 Messenger RNA biogenesis [BR:
ocu03019
]
127485576
Transcription machinery [BR:
ocu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
127485576
Messenger RNA biogenesis [BR:
ocu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
127485576
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
UspB
Motif
Other DBs
NCBI-GeneID:
127485576
NCBI-ProteinID:
XP_051684687
LinkDB
All DBs
Position
Unknown
AA seq
1437 aa
AA seq
DB search
MYAVYKQAHPPTGLEFCMYCNFFNNSERNLVVAGTSQLYVYRLNRDAEAQTKNDRSTEGK
AHRERLELVASFSFFGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEYDPGTHDLKTLSL
HYFEEPELRDGFVQNVHTPHVRVDPDGRCAAMLIYGTRLVVLPFRRESLAEEHEGLVGEG
QRSSFLPSYIIDVRALDEKLLNIVDLQFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCSI
VAISLNITQKVHPVIWSLTSLPFDCTQALAVPKPIGGVVIFAVNSLLYLNQSVPPYGVAL
NSLTAGTTAFPLRTQEGVRITLDCAQAAFISYDKMVISLKGGEIYVLTLVTDGMRSVRAF
HFDKAAASVLTTSMVTMEPGYLFLGSRLGNSLLLKYTEKLQEPPASADKEEPPSKKKRVD
ATVGWSGSKSVPQDEVDEIEVYGSEAQSGTQLATYSFEVCDSILNIGPCANAAMGEPAFL
SEEFQNSPEPDLEVVVCSGYGKNGALSVLQKSIRPQVVTTFELPGCYDMWTVIAPVHKEE
EDTPKGEGSEQEAGTPEAEDDGRRHGFLILSREDSTMILQTGQEIMELDTSGFATQGPTV
FAGNIGDNRYIVQVSPLGIRLLEGVNQLHFIPVDLGAPIVQCAVADPYVVIMSAEGHVTM
FLLKSDSYGGRHHRLALHKPPLHHQSKVIALCLYRDVSGMFTTESRLGGARDELGGRSSM
EAEGLGSETSPTVDDEEEMLYGDSGSLFSPSKEEARRSSQPPADRDPAPFRAEPTHWCLL
VRENGTMEIYQLPDWRLVFLVKNFPVGQRVLVDSSFGQPTTQGPEARKEEATRQGELPLV
KEVLLVALGSRQSRPYLLVHVDQELLIYEAFPHDSQLGQGNLKVRFKKVPHNINFREKKP
KPSKKKAEGGSSEEGPGARGRVARFRYFEDIYGYSGVFICGPSPHWLLVTARGALRLHPM
GIDGPIDSFAPFHNVNCPRGFLYFNRQGELRISVLPAYLSYDAPWPVRKIPLRCTAHYVA
YHVESKVYAVATSTNTPCTRIPRMTGEEKEFETIERDDRYVHPQQEAFSIQLISPVSWEA
IPNARIELEEWEHVTCMKTVSLRSEETVSGLKGYVAAGTCLMQGEEVTCRGRILIMDVIE
VVPEPGQPLTKNKFKVLYEKEQKGPVTALCHCNGHLVSAIGQKIFLWSLRASELTGMAFI
DTQLYIHQMISVKNFILAADVMKSISLLRYQEESKTLSLVSRDAKPLEVYSVDFMVDNAQ
LGFLVSDRDRNLMVYMYLPEAKESFGGMRLLRRADFHVGAHVNTFWRTPCRGAADGPSKK
SVMWENKHITWFATLDGGIGLLLPMQEKTYRRLLMLQNALTTMLPHHAGLNPRAFRMLHV
DRRTLQNAVRNVLDGELLSRYLYLSTMERGELAKKIGTTPDIILDDLLETDRVTAHF
NT seq
4314 nt
NT seq
+upstream
nt +downstream
nt
atgtacgctgtgtacaagcaggcgcacccgcccaccggcctcgagttctgcatgtactgc
aacttcttcaacaacagcgagcgcaacctcgtggtggccggcacctcgcagctctacgtg
taccgcctgaaccgcgacgccgaggctcagaccaagaatgacaggagcacagaggggaag
gcccaccgggagcggctggagctggtggcctccttctccttcttcggcaatgtcatgtcc
atggccagtgtgcagctggcgggggccaagcgggacgccctgctgctcagcttcaaggat
gctaagctgtcggtggtggagtacgacccgggaacccacgacctgaagaccctgtcccta
cactacttcgaggagcccgagctgcgggacgggttcgtgcagaatgtgcacacgccacac
gtgcgggtggaccctgacgggcgctgcgcggccatgctcatctacggcacgcggctggtg
gtgctgcccttccgcagggagagcttggccgaggagcacgaggggctggtgggggaaggg
cagaggtccagcttcctgccgagctacatcatcgacgtgcgggcgctggacgagaagctg
ctgaacattgtggacctgcagttcctgcacggctactacgagcccaccctgctcatcctg
tttgagcccaaccagacctggcctgggcgcgtggccgtgaggcaggacacctgctccatc
gtggccatctccctgaacatcacgcagaaggtgcaccccgtcatctggtccctcaccagt
ctgcccttcgactgcacccaggccctggccgtgcccaagcccataggtggcgtggtgatc
tttgccgtcaactcactgctgtacctgaatcagagcgtccccccgtatggcgtcgccctc
aacagcctcaccgcgggcaccactgccttcccactgcgcacccaggagggggtgcgcatc
accctggactgcgcccaggccgccttcatctcctacgacaagatggtcatctccctcaag
ggtggcgagatctacgtgctaaccctggtcaccgacggcatgcgcagtgtccgtgccttc
cacttcgacaaggcggctgccagcgtcctcaccaccagtatggtcaccatggagcccggg
tacctgttcctgggctctcgcctgggcaactccctcctcctcaagtacacggagaagctg
caggagcccccggccagtgcagacaaggaagagcctccctccaagaagaagcgagtggac
gccaccgtgggctggtcagggagcaagtcggtaccgcaggacgaggtggacgagatcgag
gtgtacggcagcgaggcccagtcgggcacgcagctggccacctactcgtttgaggtgtgt
gacagcatcctcaacatcgggccctgtgccaacgccgccatgggcgagcccgccttcctc
tctgaagagtttcagaacagccctgagccggacctggaggtcgtggtgtgctccggctac
ggaaagaacggggctctctccgtgctgcagaagagtatccggccccaagtggtgacaacc
ttcgaacttcctggctgctacgacatgtggacggtcatcgcacctgtgcacaaggaggag
gaagacacccccaagggggagggctcggagcaggaggcggggacccccgaggcagaggac
gacgggcgccgacacggcttccttattctgagtcgagaagactccaccatgatcctgcag
acgggccaggagatcatggagctggacaccagcggctttgccacacagggccccacggtg
tttgccggaaacatcggggacaaccgctacatagtccaagtgtcgccgctgggcatccgc
ctgctggaaggagtgaaccagctgcacttcatcccggtggacctgggcgcccccatcgtg
cagtgtgccgtggccgacccctacgtggtcatcatgagtgccgagggccacgtcaccatg
ttcctgctcaagagcgactcctacgggggccgccaccaccgcctggcgctgcacaagccc
ccgctgcaccatcagtccaaggtgatcgcgctgtgcctgtaccgggacgtcagcggcatg
ttcaccaccgagagccgcctgggtggggcccgcgacgagctgggcggccggagcagcatg
gaggccgagggcctgggctcggagaccagccccacagtggacgacgaggaggagatgctg
tacggcgactcgggctccctcttcagccccagcaaggaggaggcccgcaggagtagccag
cctcccgccgaccgggaccccgcacccttccgcgccgagcccacgcactggtgcctgctg
gtgcgggagaacggcaccatggagatctaccagctccccgactggcggctggtgttcctg
gtgaagaacttccctgtggggcagcgggtcctggtggacagctcctttggacagcccacc
acccaaggccctgaggcccgcaaggaggaggccacgcgccaaggggagctgcccctggtc
aaggaggtgctgctggtggccctggggagccgccagagcaggccctacctgctggtgcac
gtggaccaggagctgctcatctacgaggccttcccccacgactcacagcttggccagggc
aacctcaaagtccggttcaagaaggtcccccacaacatcaatttccgggagaagaagccg
aagccgtccaagaagaaggcggaaggcggcagcagcgaggaggggccgggggcgcgcggc
cgcgtggctcgcttccgctactttgaggacatctatggctactcgggggtgttcatctgc
ggcccctccccgcactggctgctggtgacggctcggggggccctgcggctgcaccccatg
ggcattgatggccccatcgactccttcgccccgttccacaatgtcaactgcccccgtggc
ttcctctacttcaacagacagggagagctgaggatcagcgtcctgcctgcctacctgtcc
tacgacgccccctggcccgtcaggaagatcccactgcgctgcacagcccactacgtggcc
taccacgtggagtccaaggtgtacgctgtggccaccagcaccaacaccccgtgtacccgc
atcccacgcatgacaggcgaggagaaggagtttgagaccatcgagagagatgaccgatac
gtccacccacagcaagaggccttctccatccagctcatctccccggtcagctgggaggcc
attcccaacgccaggatcgagctggaggagtgggagcacgtgacctgcatgaagacagtg
tcgctgcgcagcgaggagaccgtgtcgggcctcaagggctacgtggccgcggggacctgc
ctcatgcagggcgaggaggtcacgtgtcgcgggcggatcctcatcatggatgtgatcgag
gtggtgcctgagcctggccagcccttgaccaagaacaagttcaaggtcctgtatgaaaag
gagcagaaggggccagtgaccgctctgtgccactgcaacggtcacctggtgtccgccatc
ggccagaagatcttcctgtggagcctgcgggccagcgagctgaccggcatggccttcatc
gacacccagctgtacatccaccagatgatcagcgtcaagaacttcatcctggctgccgac
gtcatgaagagcatctcgctgctgcgctaccaggaggagagcaagacactcagcctcgtg
tcccgggacgctaagccccttgaggtgtacagcgtggacttcatggtggacaacgcccag
ctgggcttcctggtgtctgaccgagaccgcaacctcatggtatacatgtacctcccggaa
gccaaggagagctttgggggcatgcgcctcctgcgccgggctgacttccatgtgggtgcc
cacgtcaacaccttctggaggacgccgtgccgaggggcggccgacgggccgagcaagaaa
tcggtcatgtgggagaacaagcacatcacgtggttcgccacactggacggcggcatcggg
ctcctgctgcccatgcaggagaagacgtaccggcggctgctgatgctgcagaacgcactg
accaccatgctgccccaccacgcgggcctgaacccacgcgccttccggatgctgcacgtg
gaccggcgcaccctgcagaacgccgtgcggaatgtcctggatggagagctgctcagccgc
tacctgtacctcagcaccatggagcgcggcgagctggccaagaagatcggcaccacgccc
gacatcatcctggacgacctgctggagacagaccgcgtcaccgcccacttctag
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integrated database retrieval system
