Oceanirhabdus sp. W0125-5: OW730_05785
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Entry
OW730_05785 CDS
T08747
Name
(GenBank) ATP-dependent DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
ocw
Oceanirhabdus sp. W0125-5
Pathway
ocw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ocw00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
OW730_05785
09124 Replication and repair
03420 Nucleotide excision repair
OW730_05785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ocw03021
]
OW730_05785
03036 Chromosome and associated proteins [BR:
ocw03036
]
OW730_05785
03400 DNA repair and recombination proteins [BR:
ocw03400
]
OW730_05785
Enzymes [BR:
ocw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
OW730_05785
Transcription machinery [BR:
ocw03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
OW730_05785
Chromosome and associated proteins [BR:
ocw03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
OW730_05785
DNA repair and recombination proteins [BR:
ocw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
OW730_05785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
HBB
DEAD
ResIII
Helicase_C
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
WBW98279
LinkDB
All DBs
Position
1188455..1190833
Genome browser
AA seq
792 aa
AA seq
DB search
MKNMIKISVRNLVEFVMSSGDLDMVRMSNARAVEGTRIHKLVQSSSGDNYDSEVMLKYVY
EGDEIELEVSGRADGIIRDGDKCTIDEIKSTTKPLKEITEDMNPLHWAQAKGYGFIFALK
NEIETIDIQLTYYQLDEDKIIRFKKSFSIDELKNDFIGLIEEYLGWAEKIDKWIKLRNKT
IEELQFPYGDFRKGQRKLAVSVYTALKEKEKLFLKAPTGIGKTLGTAFPTLKYMGEEGLE
KIFYLTAKTITRTAAEDAFHKMRGGGLRLKTLTITAKDKICIDNTKKCDPEECEYAKGFF
DKLKPAIKDIFTNEDCFDRDRILEYSEKHKLCPFEFSLCLSEWSDVIICDYNYAYDPRVF
LRRFFGESKKNYAVLVDEAHNLVDRAREMYSAEIYKQPILEIRKKINDDFPNVVKALNRI
NRFMIEARKECEEADGVVLKKEAPDMLYPYLTRFIDQSEDILENGANKEYFDEFMEFYFK
AVGMVRTWEFYDGNYVTYYEKMGQDIKIKLFCLDPSKVLQDKMKMVRSTILFSATLIPLD
YYMKLLGGNEESLRLSLESPFDQKNLCLLVNDKISTKYRAREKTILQLCNVIMNVVLSKK
GNYMIFFPSYKYMNDALEILNMAGFNHKVDVIVQDISMNEIEREEFLKEFDKERECSMAA
FTVMGGIFGEGIDLTGDRLTGAIIVGVGLPQICFERDIIKQHFNDKGKNGFNYSYVYPGM
NRVLQAAGRVIRTEEDRGVVLLIDERFSYGGYKGLFPEEWSHYHRIADKDDLEDELSVFW
NNNCKNSIDLKD
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaatatgataaaaatttcagttaggaacttagttgaatttgttatgtcctcagga
gatttggatatggtacgaatgagcaatgccagagctgttgaaggtactagaattcataaa
cttgttcagagtagtagtggagataattatgattctgaggtaatgttaaagtatgtttat
gaaggagatgaaattgaactagaagttagtggtagagctgatggtattataagagacggg
gataagtgcactattgacgagattaaatcaactacaaaacccttaaaggaaattacagag
gatatgaacccattacattgggctcaggctaaagggtatggttttatttttgcacttaag
aatgaaattgaaacaatagatatacagcttacatattatcaattagacgaagataaaata
ataagatttaaaaagagtttttctatagatgaactgaaaaatgattttattggactaatt
gaagaatatttaggttgggctgaaaaaatagataagtggataaagttacgtaataaaact
atagaagagttacaatttccatatggtgattttagaaaaggtcagagaaaattggctgtg
agtgtttacactgcattgaaagaaaaagagaaactgttcttaaaagcacctacgggaatt
ggaaaaactctaggaactgcctttcctactctaaaatatatgggggaagaagggttagaa
aaaatcttttatcttacagctaaaacaataactagaactgcagctgaagatgcatttcat
aagatgagaggtgggggacttaggttaaaaaccctcactattactgcaaaagataagata
tgtattgataatacaaaaaaatgtgatcctgaagagtgtgagtatgctaaaggtttcttt
gataaactaaagcctgcaataaaggatatattcactaatgaggattgttttgatagagat
aggattctagagtatagtgaaaaacataaactctgtccatttgaattttctttatgctta
tctgagtggagtgatgtgattatatgtgattataattatgcttatgatccaagggtattt
ttgagaaggttttttggagagagtaaaaaaaattatgctgttctagttgatgaagctcat
aacttggtggatagagctagagaaatgtattcagcagagatatataagcagcctatttta
gagattagaaaaaaaataaatgatgattttcctaatgtagttaaagccttaaataggata
aatagatttatgatagaagctagaaaagaatgtgaagaagcagatggagtagtgttaaaa
aaggaagctcctgatatgctatatccatacttaactagatttatagatcaaagtgaagat
atcttagaaaatggagccaataaggaatattttgatgaatttatggagttttattttaaa
gctgtagggatggtaagaacttgggagttttatgatggaaactatgtaacttattatgaa
aaaatgggacaggatattaagataaaattattttgccttgatccatcaaaggtattacag
gataagatgaagatggtgagaagtacaattttattttctgctacattgataccattggat
tattacatgaagttattaggagggaacgaggaatcattaagattatcacttgaatctcct
tttgatcagaaaaatttatgtttattagttaatgataaaatttcaactaaatatagagca
agagagaagactatactacagttatgtaatgtaataatgaatgtggttttaagtaaaaag
ggcaattatatgatatttttcccttcatataaatatatgaatgatgccttagagatatta
aatatggctggtttcaatcataaggttgatgtaattgttcaagatataagtatgaatgaa
atagagagagaagagtttcttaaagagtttgataaagaaagagagtgttccatggcagct
tttactgttatgggaggaatctttggagaaggaatagatttaacaggagatagattgaca
ggagcaattattgtgggggtaggattaccacaaatttgctttgagagagatattattaag
caacattttaatgataaagggaaaaatggttttaattattcttatgtttacccaggtatg
aatagggtattacaagctgcaggaagagtgataagaacagaagaagataggggagtagtt
cttttgatagatgaaagattttcttatggtggatataaagggttatttcctgaagaatgg
agtcattatcatagaattgctgataaagatgaccttgaagatgaattgagtgtattttgg
aataataattgtaaaaattccattgatttaaaagattaa
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