Oceanirhabdus sp. W0125-5: OW730_06810
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Entry
OW730_06810 CDS
T08747
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ocw
Oceanirhabdus sp. W0125-5
Pathway
ocw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OW730_06810 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ocw03021
]
OW730_06810 (rho)
03019 Messenger RNA biogenesis [BR:
ocw03019
]
OW730_06810 (rho)
Transcription machinery [BR:
ocw03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
OW730_06810 (rho)
Messenger RNA biogenesis [BR:
ocw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
OW730_06810 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
AAA
AAA_22
HeH
OB_RNB
Spore_III_AA
Peptidase_C58
ABC_tran
Ribosomal_S6
Motif
Other DBs
NCBI-ProteinID:
WBW98473
LinkDB
All DBs
Position
1415611..1417137
Genome browser
AA seq
508 aa
AA seq
DB search
MNKVDELMNKNLSELKEIAKNYNIKGISKYRKSELIELLNEEMSKEKVQGETQQKKESIS
DTKTEQKREEKRDNKASAYAIKKEGSVLREKISPKKYESTNTSVSSSNSNIESEEKKTKL
KEMLSDSLTAKGVLEINENNNYGFLRCHNYLSGANDVYVSPSQIRKFNLKTGDMVIGKIR
QPNDGEKFNALLYVQSINGESPEKAIGRPLFEKLTPIYPNERLRLESGQLDLTTRLMDIM
SPIGKGQRGLIVAPPKAGKTTILKKIAKSLKLNNPEINLIVLLIDERPEEVTDMQRSIDG
EIVYSTFDEEPGHHNKVSEMALERAKRMVEQGQDVVILMDSLTRLVRSYNLTVTPTGRTL
SGGLDPGALLQPKKFFGAARNVEGKGSLTILATVLVDTGSRMDDMIYEEFKGTGNMEVHL
DRKLQERRIFPAIDIFKSGTRREDLLLDRNEYEIAYGIRKMMYSEGKVPVITEKILGILS
KTKTNSDFIGMLEGNMEILVKDSLKNRI
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgaataaagtggatgaattaatgaataaaaacttatctgagttgaaggaaattgctaaa
aattataatattaaaggaatttcaaaatatagaaaatcagaacttattgaattacttaac
gaagaaatgagtaaagaaaaagttcaaggtgagactcagcaaaaaaaagaaagtataagt
gatactaaaactgaacaaaaaagagaagaaaaacgtgataataaagcttctgcttacgca
ataaaaaaagaaggttcagttttaagggaaaaaatttcacccaaaaagtatgagagtact
aacactagtgttagtagtagcaatagtaatatagaaagtgaagagaagaaaacaaaattg
aaagaaatgctatcagactctttgacagctaagggagttcttgaaataaatgaaaataac
aattatggttttttaagatgtcacaattacctttcaggtgcaaatgatgtgtatgtttca
ccatcgcaaataagaaagtttaatcttaaaactggtgatatggttatagggaaaattaga
caacctaatgatggtgaaaaatttaatgctcttctttatgtgcaatcaataaacggagag
agtcctgaaaaagctataggaagaccattgtttgaaaagcttactcctatctatccaaat
gaaaggttaagattagaaagtggtcagttggatttaacaacaagattgatggatattatg
tctccaataggaaaaggtcaaagagggctaattgttgcacctcctaaggctggtaaaaca
actattcttaaaaaaattgcaaaaagtcttaagttaaataatcctgaaattaatttaatt
gttctccttattgatgaaagaccagaggaagttactgatatgcaaagaagtatagatgga
gaaattgtatattctacttttgatgaagaaccaggacatcacaataaggtttctgaaatg
gctcttgaaagagcaaaaagaatggtagaacaggggcaagatgttgtcatattaatggat
agtttaactcgtttagttagatcatataaccttacagtaacacctactggaagaactctt
tcaggaggattggatccaggagcgttgctacagcctaaaaagttttttggagcagcaaga
aatgttgaaggtaagggaagtcttacaatattagcaactgtacttgttgatacaggaagt
agaatggatgatatgatttatgaagagtttaaaggaacaggaaatatggaagttcattta
gatagaaaacttcaagaaagaagaatattcccagctattgatatatttaaatcaggaaca
agaagagaagatttattacttgatagaaatgaatatgaaattgcatatggcataagaaag
atgatgtatagtgaaggaaaagttccagtaattactgaaaaaatacttggaattctttca
aaaacaaaaactaatagtgattttataggtatgcttgaagggaatatggaaatattggtt
aaagactcgttaaagaacagaatctaa
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