Oceanirhabdus sp. W0125-5: OW730_07665
Help
Entry
OW730_07665 CDS
T08747
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ocw
Oceanirhabdus sp. W0125-5
Brite
KEGG Orthology (KO) [BR:
ocw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ocw03016
]
OW730_07665
Enzymes [BR:
ocw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
OW730_07665
Transfer RNA biogenesis [BR:
ocw03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
OW730_07665
Prokaryotic type
tRNA splicing ligases
OW730_07665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Phage_scaffold
RhsPI
Baculo_Ac102
DUF3502
Motif
Other DBs
NCBI-ProteinID:
WBW98623
LinkDB
All DBs
Position
1602431..1603654
Genome browser
AA seq
407 aa
AA seq
DB search
MIKVQGQFSEAKVFTNNIEEEAINQLKRLCDLPFTKGCKVRIMPDTHVGVGCVIGFTADL
GDKVIPNIVGVDIGCGMLTVELGDTELDLKKLDEIIRKHIPSGKSTHEGRIVRFEKLQNL
YCYRDLKDTKRLERSIGTLGGGNHFIEVGKDSKGKNYLVIHSGSRNLGTQVAKYYQDLAV
DLCSGKESYYKEREELIQEYKKAGRRKELQKVLKELKKKYDELQPEYPKQLCYLTGEFRE
KYLHDMNICQEYAELNRETMADIILKKLLGRELKRFEYFNTTHNYINFEDNIIRKGSISA
YKGEKVLIPINMRDGSLICIGKGNEDWNNSAPHGAGRLMSRSKAKETVNLEEFKESMKGI
YTTSVSMATLDEAPMVYKPMEEIVNNIQDTVDIVEVIKPIYNFKAGS
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgattaaagtacaaggacagtttagtgaagcaaaggtattcactaataatatagaagaa
gaggctataaatcaattaaaaagactatgtgatttaccatttactaaagggtgtaaagta
agaataatgccagatactcacgtgggagtaggatgtgttattggatttacagcagattta
ggtgataaggtaattcccaatattgttggagttgatattgggtgcggtatgcttactgtt
gaattaggagatacagagttagatttaaaaaaacttgatgagataattagaaagcatatc
ccttcaggaaagagtacacatgaaggaaggattgtaagatttgaaaaattacagaattta
tactgctacagagacttaaaggatacaaagagacttgagagaagtattgggacattaggg
ggaggaaatcacttcatagaagttggaaaagactcaaagggaaaaaattatcttgttata
cactctggaagtagaaatcttggtacacaagttgcaaagtattatcaggatttagcagtt
gacttatgcagcggaaaagaatcatattacaaagagagagaggaattgattcaggagtat
aagaaggctggaagaagaaaagaattacaaaaagttctaaaggaattaaagaaaaagtat
gatgaacttcaacctgaatatcctaagcaattatgttatttaaccggggaattcagagaa
aaatatttgcatgatatgaacatatgtcaagagtacgcagaattaaatagagaaacaatg
gcagatataatattaaaaaaattacttggaagagaactaaaaagattcgaatattttaat
actacacataattacattaactttgaagataacataataagaaaaggaagtatatctgca
tacaaaggagagaaagttctgattccaattaatatgagagatggaagcttgatatgtatt
ggaaaaggaaatgaagactggaacaactctgctcctcatggtgcaggaagattgatgagc
aggtcaaaggcaaaagaaactgtaaacttagaagaattcaaagagtctatgaaaggaata
tatacaacttcagtcagtatggcaaccttagacgaagctccaatggtatataagcctatg
gaagaaatagtgaataacatacaggatacagttgatattgtagaggtgattaagcctata
tataattttaaagcaggatcttaa
DBGET
integrated database retrieval system
