Oceanirhabdus sp. W0125-5: OW730_08630
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Entry
OW730_08630 CDS
T08747
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
ocw
Oceanirhabdus sp. W0125-5
Pathway
ocw02020
Two-component system
ocw02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ocw00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
OW730_08630 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
OW730_08630 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ocw03021
]
OW730_08630 (rpoN)
Transcription machinery [BR:
ocw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
OW730_08630 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_21
HTH_23
HTH_28
HTH_38
Sigma70_r4
MarR
Motif
Other DBs
NCBI-ProteinID:
WBW98810
LinkDB
All DBs
Position
1851629..1852978
Genome browser
AA seq
449 aa
AA seq
DB search
MDLNVNLNISQEQKLVLTQQMKLSIDILQFSSLELTEFIEEKIQENPLLEKGSGDSDDMI
EFVKELGKYDKDKYERVEYNNDYVSPLNFVIEEEGLYEYLLKQLKNLNLSKEYSEILEYL
IHNIDEKGYLNVEEETVLKDFNISLNEYEACVNILQNMEPTGIGARGLKECLHIQLKKKE
YTNEVLYEIVNEHLDLIASNKYKEISQIYGIKINEAQDLGDIIKKLEPKPARGFNTGEKI
IYITPDVFVRNVNGELIVLLNERNAPNLQINNLYMNIIKNENANDEEKKYVKEKISEALN
IIKGIDQRKSTLYKVSEKIVEKQKEYFLKGDVYLKPMILKEIASELDLHESTISRAIKNK
YLEGPKGIVAIKELFSASLKGDYNKEESSAKSIKSIIKNIINGENKKKPYSDNVISNMLL
EQGIKISRRTVAKYREELGILSTSKRKRF
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atggatttgaatgttaatttaaatatttctcaggaacaaaagttggtgttaactcaacaa
atgaaattatctatagatatattacagttttcttctttggagctaactgagtttattgaa
gagaaaattcaagagaatcctttgttggaaaagggtagtggtgattctgatgatatgatt
gagtttgtgaaggaacttgggaagtatgataaggataagtacgaaagagtagaatacaat
aatgattatgtatctcctttgaattttgtaatcgaggaagaagggttgtatgagtattta
ttaaagcagcttaaaaatttaaatctctccaaagaatattctgaaattttagagtactta
atacataacatagatgaaaaaggatacttgaatgttgaggaagaaactgtgctaaaagat
tttaacataagcttaaatgaatatgaagcatgtgtaaacatactgcaaaatatggagcca
acaggaataggtgcaagaggtttaaaagaatgtttacacatacaattgaagaagaaggaa
tatactaatgaggtcttgtatgaaatagtaaatgaacatttggatttaattgctagcaat
aaatataaagaaatatcacaaatatatggaattaaaataaatgaagctcaagatttagga
gatattataaaaaaacttgaacctaaaccagctagaggatttaacactggcgaaaagata
atatatattactcctgatgtattcgtaagaaatgtaaatggagagttaatagttttattg
aacgaaagaaatgcaccaaatcttcaaataaataatttatatatgaatattattaaaaat
gagaatgcgaatgatgaagaaaagaaatatgttaaggaaaaaattagtgaagctcttaac
ataattaagggaatagatcaaagaaaaagcacgctatataaagtaagtgagaaaatagtt
gaaaaacaaaaagaatatttcttaaaaggagatgtatatcttaagccgatgattttaaag
gaaattgcatcagaattggatttgcatgagtcgacaattagtagggcgattaaaaataag
tacttagaagggccaaaaggaatagttgcaataaaagaattatttagtgcttctttaaaa
ggggattataataaagaagaaagttcggcaaaatcgataaaaagtataataaaaaatatt
attaatggtgaaaataaaaagaagccttattcagataatgtaatttctaatatgttatta
gagcaaggaattaagatatcaaggaggactgtagctaagtacagagaggagttgggtata
cttagcacaagtaaaagaaaaaggttttag
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