Oceanirhabdus sp. W0125-5: OW730_08685
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Entry
OW730_08685 CDS
T08747
Symbol
pcrA
Name
(GenBank) DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ocw
Oceanirhabdus sp. W0125-5
Pathway
ocw03420
Nucleotide excision repair
ocw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ocw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OW730_08685 (pcrA)
03430 Mismatch repair
OW730_08685 (pcrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ocw03400
]
OW730_08685 (pcrA)
Enzymes [BR:
ocw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OW730_08685 (pcrA)
DNA repair and recombination proteins [BR:
ocw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OW730_08685 (pcrA)
MMR (mismatch excision repair)
Other MMR factors
OW730_08685 (pcrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
Viral_helicase1
AAA_30
AAA_11
ResIII
Terminase_6N
Motif
Other DBs
NCBI-ProteinID:
WBW98820
LinkDB
All DBs
Position
1865814..1868045
Genome browser
AA seq
743 aa
AA seq
DB search
MNLKELLNREQYEAATHIEGPLLILAGAGSGKTRVLTYRIAHMIKEKDIFPYNILAITFT
NKAAGEMRERVKKLIGERAEGMWISTFHSSCVKILRREAEHMGFNSNFTIYDSYDSKALV
KQCMKEIGIDEKDITDKEIIGTISKCKNELKTAMDFKKQVQDNYRKNRIADVFLLYTKRL
RANNAMDFDDLIFNTVQLFEKNPEVLEFYQRKFKYIMVDEYQDTNYAQYKLVKSLAEGYN
NICVVGDDDQCIYQWRGADIQNILDFEKDFKNTKVVKLEQNYRSKGAILQAANSVIKYNS
KRKDKVLRTEQVLGEKLRIYRGFTDKDEAAFVAREIKKIREDSSLHYRDFAILYRMNSQS
RTFEDAFRRASIPYRILGGLRFYDRKEIKDVMAYLKVINNPQDDISLQRIINVPKRAIGD
ATVQKIRDFAQETDECLYSAILDIDFIPGLSSRAKSSVNKFLNLMNGFIELREDMTISQI
IKKILEDTGYMKALKDSKDPEDESRVENLKELVSEAVDFENNNEDKSLEAFLEQATLVSD
TDNYNEEDDSVVLMTVHASKGLEFPAVFMVGMENGIFPSDACFNSNEEMEEARRLCYVAI
TRAEEKLYLTSAEQRMVFGRTSCHPQSDFIEEIPLNLKETVGSGNRAVNRLGANRTQTLK
KEYNPHALGAKKSSYSNSAVNNSAGSKVNSKEFVPGRKIHHPKFGEGTIITAAHSGDKAM
LTIAFSNMGIKKLDSSIAPLKLL
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
ttgaacttgaaggaactattaaacagggaacagtatgaagcagcaacacatattgaaggt
ccattgcttatattagctggagcaggttcagggaaaactagagttttgacatatagaata
gcgcatatgataaaggaaaaggacatatttccatataacatattagctataacatttaca
aataaagcagctggagaaatgagagagagggttaaaaagcttattggcgagagagctgag
gggatgtggatctcaacttttcactcatcatgtgttaaaattcttagaagagaagcagaa
catatgggattcaacagtaattttacaatatatgattcttatgattcaaaagcattagtt
aaacaatgcatgaaggagataggaattgacgaaaaggatataacagacaaagaaatcata
ggcacaatatcaaagtgtaaaaatgaacttaagacagcaatggattttaagaaacaagtt
caggataattatagaaagaataggattgctgatgtatttttattatatactaagagatta
agagcaaataatgcaatggatttcgatgatttaatattcaatacagtacagttatttgag
aagaatcctgaggttcttgaattctatcaaagaaaatttaaatatataatggtggatgag
tatcaggatacaaactatgcccaatataagttagttaaatcactagcagagggatataac
aatatttgtgttgttggagacgatgaccaatgtatttatcagtggagaggggcagatatt
caaaatatccttgattttgaaaaggactttaaaaacactaaggtggttaagcttgaacag
aactatagatcaaagggtgcgatacttcaggctgcaaacagtgtaataaaatataattca
aaaagaaaagataaagtactgagaactgagcaagttcttggagagaaacttagaatatat
agaggttttacagataaagatgaagcagcctttgttgctagagagataaagaaaattaga
gaggatagttctttacactatagagatttcgcaatactatatagaatgaactctcaatct
agaacatttgaggatgccttcagaagagcatcaataccttataggattcttggagggctt
agattctatgatagaaaagagataaaggatgttatggcatatcttaaagtcataaataac
ccacaggatgatataagtctgcagagaataattaacgttccaaagagagctattggagat
gctacagtacagaaaataagagattttgcacaggaaacagatgagtgtctttacagtgcg
attctggatatagattttataccaggactatcttcaagagcaaaaagttcagtgaataaa
ttcttaaatcttatgaatggatttattgaacttagagaagatatgacaatttctcagata
atcaagaagattttagaggatactggatatatgaaagcattaaaggattctaaagatcca
gaggatgagagcagagttgagaacttaaaggaattggtttctgaagcagttgattttgag
aataataatgaagataagagtctagaagctttcttagagcaagcaactttagtatctgat
actgataattataatgaagaagatgatagtgtggtgcttatgacagtacacgcttcaaaa
gggctagagttccctgcggtatttatggtaggtatggagaatggaattttcccaagtgat
gcttgttttaacagtaatgaagagatggaagaggcgagaagattatgctatgttgccatt
actagagcagaggaaaagttatatcttacttctgcagaacagagaatggtatttggtaga
acaagttgtcatccacagtcagattttattgaggaaattcctctaaacttaaaagagact
gtaggaagtggtaacagagcggttaatagattgggagcaaatagaacacaaactttaaag
aaagagtataatccccatgcattaggagcaaagaaaagttcatattcaaatagtgctgtg
aataattcagctgggagcaaagtaaactctaaggagtttgttccaggtagaaagatacac
catcctaaatttggagagggaactataattactgctgcccacagtggtgataaagctatg
cttactatagcattcagcaatatgggaattaaaaagcttgatagttctatagcaccactt
aaacttttatag
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