Oceanirhabdus sp. W0125-5: OW730_09945
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Entry
OW730_09945 CDS
T08747
Name
(GenBank) HD domain-containing protein
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
ocw
Oceanirhabdus sp. W0125-5
Brite
KEGG Orthology (KO) [BR:
ocw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocw03019
]
OW730_09945
Messenger RNA biogenesis [BR:
ocw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OW730_09945
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
DUF5847
HDOD
tRNA_anti-codon
Cas3_HD
DUF3516
Motif
Other DBs
NCBI-ProteinID:
WBW99044
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All DBs
Position
2116313..2117209
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AA seq
298 aa
AA seq
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MKKQFVNDLKDKMNVKSSFMIVKKLAREEGNLIAYVGDKTGDVKATLPDDKNKLEVGDII
YISGKMDGSIKAQHVKKEEEYNLEDYLPSIDKSIDKIIEEMRVLSDEVFKSEECKALDDY
FFKNEEFVERFKKGIGGLRQHHNYLGGLAEHSLNAMYIAKTLAERYDIRHKEIAVLGAKL
HDIGKIEEYFTNGPFSVTMLGEMEGHIVTGNAMIEEAFREGGDIYSEDFKMRMKSCILQH
HGKIEYGSPKVPKTEEAYIVHLADYVDAIMNKIEQVRNITEPGEWSEYDRRIGTKLYM
NT seq
897 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagcagtttgtcaatgatttaaaggacaaaatgaatgttaaatcttcctttatg
atagttaaaaaattggcaagagaagaaggaaatcttattgcttatgtaggggacaagaca
ggagatgttaaagcaacacttccagatgataaaaataaattagaagtaggagatataata
tacattagtggaaaaatggatggcagcattaaagcacagcatgttaaaaaagaagaagaa
tataatcttgaagattaccttccatcaatagataaatcaattgataaaataattgaagag
atgagagttttatcagatgaagtatttaaaagtgaagaatgtaaagccttagatgattat
ttctttaaaaatgaagaattcgtagagagatttaaaaaagggattggaggattaagacaa
catcataattatttaggaggacttgcagaacattcattaaatgcaatgtatatagcaaaa
actcttgcagagagatatgacattagacataaagagatagcagttttaggagctaaactt
catgatataggaaagattgaggagtattttactaatggtcccttctcagtaacaatgtta
ggtgaaatggaggggcatattgtaacgggaaatgctatgatagaagaagcttttagagaa
ggtggagatatttacagtgaagattttaagatgagaatgaaaagctgtattcttcaacat
catggaaaaatagagtatggctctccaaaggttccaaaaactgaagaggcatatattgtt
catttagctgattatgtagatgcaataatgaataaaatagaacaggtaagaaatattact
gaacctggtgaatggtctgagtatgatagacgtataggaacaaaattatatatgtaa
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