Oceanirhabdus sp. W0125-5: OW730_11295
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Entry
OW730_11295 CDS
T08747
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ocw
Oceanirhabdus sp. W0125-5
Pathway
ocw03030
DNA replication
ocw03430
Mismatch repair
ocw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ocw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OW730_11295
03430 Mismatch repair
OW730_11295
03440 Homologous recombination
OW730_11295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ocw03032
]
OW730_11295
03400 DNA repair and recombination proteins [BR:
ocw03400
]
OW730_11295
Enzymes [BR:
ocw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
OW730_11295
DNA replication proteins [BR:
ocw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
OW730_11295
DNA repair and recombination proteins [BR:
ocw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
OW730_11295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
HROB
Motif
Other DBs
NCBI-ProteinID:
WBW99736
LinkDB
All DBs
Position
2434338..2437877
Genome browser
AA seq
1179 aa
AA seq
DB search
MINSVREFKREDLGKFAHLHVHTGYSLLDGSGKIKDIISRAKELGMGSIAITDHGNMFGC
VEFYKEALKQGVKPIIGCEVYVVPKSMHIKRSDSENETHHLILLVKNEIGYKNLMKIVTT
ASVEGFYYKPRIDRNFLKEHSEGLIAASACLGGEIPKQIMYGNLEKAREIAKDYKAVFKD
DYYIELQNHGMKEEIEVNTELINIAQELQIPLICSNDVHYIKREDSVAHDTLLCIQTGKT
VDDENRMRFPNDEFYLKSPEEMKNLFSDVPEAIENTIKIAEKCNFDYEFHVSKLPKYPIP
EGETADGYLKKLCYEGLKERYADINTELTERLEYELGIINQMGYDDYFLIVWDFIKYAND
TGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLIFERFLNPERISMPDIDSDFCYERRQE
VIDYVVDKYGEKNVSQIVTFGTMAARACIRDVGRALNYSYNEVDRIAKMIPSVLNITIDK
ALEMNFELSELYNSDSRVKELIDISKTLEGLPRHTSTHAAGVVIASKELVNYVPLLKTDE
SIVAQFDMNTLEELGLLKMDFLGLRNLTVIRDAVDIIHDNYNVKIDIDSIDYGDKNVYKM
LGEGKTAGVFQLESSGMTSFMKDLKPDSLEDIIAGISLYRPGPMASIPKYLKYKKNTDLI
EYETPELESILDVTYGCMVYQEQVMQIVRDLAGYSMGRSDLVRRAMSKKKHKVMEEERKN
FVYGAKDENGEVIVPGCIAKGISKDAANSIYDAMMDFASYAFNKSHAAAYAIVAYQTAYL
MCYYPTEFIAAMLNSVMGSSEKVAFYIRFAEKRGIQLLAPDINESEYKFTSKDKKIRFGL
GALKNVGENAIMDIVYSRKDKGNFKDFMDFCNKVRFNHLNKRAVESLIKGGAFDTLECKR
SQLMAVYERVIDGIQNDKKRNIEGQISLFEISSTKVQTEAFNSLKLPDIQEFRKKHLLAM
EKEVTGLYISGHPLEEYEGSINNMTSKRISDIVAEHEIMDEDTNEIMIRYDVNENERVII
GGIISEVSKKVTKRNDLMAFIKIQDVYDEIEGIIFPKTLREYEEKIYEDNIVIIKGRINI
REEEKPKLICENIRVIEKSSDENIYIQVFNKADMKHALNNIELSLDGYKGETPVKIYVKG
DKAYLTDNKYWVDGSIESLSKLREIFGSENVKVVSNHAS
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atcattaacagtgtaagggaatttaagagagaagatttaggaaagtttgcacatctacat
gtacatactgggtacagtcttttagacggttcaggaaaaataaaggatatcatatctaga
gcaaaagaattaggtatgggaagcatagcaataacagatcacggaaatatgtttggatgc
gtagaattctataaagaagcattgaagcaaggtgtaaaaccaattattgggtgtgaagtt
tatgttgtacctaaatccatgcatatcaagagaagtgactcagaaaatgaaacacatcac
ttaatattattggtcaaaaatgaaattggttataaaaatttaatgaagattgtaacaact
gcttctgtagagggtttttattataagccaaggatagatagaaatttcttaaaggaacat
agtgaaggattaattgctgccagtgcttgtttaggtggagagatacctaagcaaattatg
tatggaaatcttgaaaaggcaagggaaattgcaaaggattacaaggcagtttttaaagat
gattattatattgaattacaaaatcatggtatgaaagaagaaattgaagtaaatacagag
ttaatcaatatagcacaagagttacaaattccgttgatatgttcaaatgatgttcactat
ataaaaagagaagattcggtagcccatgacacacttttatgcattcaaacaggaaaaact
gtagatgatgaaaacagaatgagattccctaatgatgaattctatttaaagtctcctgag
gagatgaaaaatcttttcagtgatgtacctgaagctatagaaaacacaataaagatagct
gagaaatgtaattttgattatgagtttcacgtatctaaacttcctaaatatcctattcca
gaaggagaaacagcagatggatatttaaaaaagctatgttatgaaggattaaaagaaaga
tatgctgatataaatacagagttaactgaaaggttagaatatgaacttggtataatcaat
cagatgggatatgatgattatttccttatagtttgggattttataaaatacgcaaatgat
acagggataatgacaggcccaggaagaggaagtgctgcaggttctttagtagcgtatact
ctagggataactaaaattgaccctattaaatataatttaatttttgaaagattcttgaac
cctgaaagaatatctatgcctgatattgattcagacttctgttatgagagaagacaagaa
gttattgattatgttgtagataaatatggagaaaagaatgtatcacaaattgttacattt
ggaactatggctgctagggcatgtattagagatgtaggaagagcattaaattattcatat
aatgaagtggatagaatagcaaaaatgatacctagtgtgcttaatataacgatagataaa
gctcttgagatgaatttcgaactatctgaattatacaattcagatagtagagtaaaagaa
cttatagatatatcaaaaactcttgaaggattaccaagacatacatctacacatgcagca
ggggtagtaattgcttcaaaagagttagttaattatgttccattattaaaaacagatgag
tcaattgttgcacagtttgatatgaataccttagaagaacttggtttgttaaaaatggac
ttcttaggattaaggaatcttactgttattagggatgcagttgatattatacatgacaat
tacaatgtgaaaatagatatagatagtatagattacggtgataaaaatgtgtataaaatg
cttggagagggcaagacagctggtgtgtttcagttagaatctagtggtatgacaagtttt
atgaaggatcttaaaccagattcattagaggatattatagctggaattagtttatataga
ccagggcctatggcttcgattccaaaatacttaaaatataagaagaatacagatttaata
gaatatgagacaccagagttagaaagcatattagatgtaacctatggatgtatggtttat
caagagcaggttatgcagatagtaagagatcttgcagggtattccatgggaagaagtgac
cttgttagaagagccatgtctaaaaagaaacataaggtcatggaagaagagagaaagaat
tttgtatatggcgctaaagatgagaatggagaagtaattgttccaggttgtattgctaag
ggtatttcaaaagacgctgctaatagtatatatgacgcaatgatggatttcgcatcttac
gcatttaataaatctcatgcggctgcttatgctattgtagcctatcaaacagcttacttg
atgtgctattaccctactgaatttattgcagctatgcttaactcagtaatgggaagttct
gaaaaagttgcattctatattagatttgcagaaaaaagaggaattcaactcttagcgcct
gacattaatgaaagtgaatataaatttacttcaaaggataaaaaaataagatttggatta
ggtgcattaaaaaatgttggtgagaatgccataatggatattgtatatagtagaaaagat
aaaggaaacttcaaggatttcatggatttttgcaataaggttagatttaaccacctgaat
aaaagagcagttgagagtttgattaaaggtggagcatttgatacattagaatgcaaaaga
tcccaacttatggctgtatatgagagagtaattgatggtatacaaaatgataaaaagaga
aatattgaagggcaaattagtctttttgaaataagcagtacaaaagtacaaacagaagct
tttaattcattgaagttacctgatattcaagaattcagaaagaagcatttgttggctatg
gagaaagaagtaacagggttgtatataagtggtcatcctctagaagaatatgagggatct
ataaataatatgacatcaaaaagaatttcagatattgttgcagaacatgagattatggat
gaagatacaaatgaaattatgatcagatatgatgtgaatgaaaatgaaagagtaattatt
ggtggcataatttcagaggtttctaaaaaagtaactaaaagaaatgatcttatggcattt
ataaaaattcaagatgtctatgatgagattgaaggaattatatttccaaaaacacttaga
gaatatgaagagaaaatatatgaagataacatagtgattataaaaggtcgtattaatatc
cgagaggaagaaaaacctaaattaatttgcgaaaatataagagttattgaaaaatcttca
gatgaaaatatatatattcaagtttttaacaaagcagatatgaaacatgctttaaataat
attgaactttcattggatggatacaagggagaaacaccagttaagatttatgtaaaaggc
gataaagcttatttaactgacaataaatattgggttgatggtagcattgaatcactttct
aaattacgggagatttttgggagtgagaatgtaaaagttgtatcaaatcatgcttcttaa
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